<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27215

Description Uncharacterized protein
SequenceAPLLSPQSWPSQLPPAQSEIMKVVNLKQAILQVWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEHSLLKLGEILANLSNSQLRSQAEQCGTLIRSIPMMLSVHAEQMNKTGFPTVHAVILLEGTMNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKYSHRDKDFTEDVNCAFEFLLKLTPLLDKGDQRCNCDCTNFLLQECGKQGLLSEASVNSLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSEKSLDLLLAAAAATEKLKSFARKFINLNEFTTYGSEESTKPASVWALLFDISFLTLCHVAQTYGSEVILSESRTGADVPFFETWMQTCMPEEGKILNPDHLCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLNTLQFYNERVVIMNSILERLCADVLQQTATQIKFPSTRVDTMPYWNLLPPKRPIKEVLTDIFAKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKERALRAVELLYSILCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASTRQKKRHREDIEDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPNRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTVSELVKVSAMSSPKVVLAITDLSLPLGRQVAAKAIAAL
Length977
PositionTail
OrganismMacaca mulatta (Rhesus macaque)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Cercopithecinae> Macaca.
Aromaticity0.07
Grand average of hydropathy0.012
Instability index50.29
Isoelectric point6.49
Molecular weight109245.96
Publications
PubMed=17431167

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27215
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.27|      21|      26|     112|     136|       1
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  112-  136 (29.62/29.45)	LCvQALLDIMDMFcdrLSCHGKAEE
  140-  160 (37.65/21.65)	LC.RALLSALHWL...LRCTAASAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.59|      51|     200|     556|     623|       3
---------------------------------------------------------------------------
  492-  553 (74.72/48.67)	ESTKPASVWALLFDISFLTLChvaQTYGSEVILSESrtGADVPFFETWmqtcmpEEGKILNP
  561-  611 (87.87/64.74)	DSTKVESLVALLNNSSEMKLV...QMKWHEACLSIS..AAILEILNAW......ENGVLVCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     301.67|      97|     769|       3|     111|       4
---------------------------------------------------------------------------
    3-  111 (153.01/138.46)	LLSPQS.WPSQLPPAQSEIMKvvnlkqaiLQVW..KERWSDYQWAINMKKffPKGATWDILNLAdALLEQAMIGPSPNPLILSYLK...YAISSQMVSYSSVLTAiSKFDDFS.RD
  780-  883 (148.66/103.45)	LLTDSSkWHSLMDPPGTALAK........LAVWcaLSSYSSHKGQASTRQ..KKRHREDIEDYI.SLFPLDDVQPSKLMRLLSSNEddaNILSSPNRSMSSSLSA.SQLHTVNmRD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27215 with Med24 domain of Kingdom Metazoa
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