<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27203

Description Uncharacterized protein (Fragment)
SequenceIIDVCAGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSFGGQAPVQTVWQTKVNKSIPPTSDFKSQQTPATGPTSERNTSDSSMDMGKRVSFDPFDLPSDVRTLAQISYSAHGGEIAVAFLRGGVHIFSGPNFTPVDNYQINVGSAIATPAFSSTSCCSASVWHDTNKDRTMLKIIRVLPPAVPSSQCWRKEYLKERRKWGCVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGINAQEVRAMVLDMQARLLLDMLGKGIESALMKPSALVPEPWQATGETLSGIDPEEMAVDPALVFSIQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRSAVASPTQSSASPATSQGGQSGTTSSTGSTQMQAWVQGAIAKISSTTDGVPNSTPNPINGPPSFIPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRVIGVAQRNADTNMHKPQATGTSKVEENSTVSNKLASAMARSEEGQVARANHAINGAKGAEEGPTGRSRLGSGNAGQGYTFEEVKVLFLILMDLCRRTAALQHPLPISQVGSNNIQVRLHYIDGSYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDMGSVDDTPKLSTYADPLESNSFENNDTYYGARGLWPRKRRLSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFAADATNQPNQNEREMWWISRWAYGCPMCGGTWVRVV
Length782
PositionTail
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.08
Grand average of hydropathy-0.304
Instability index41.55
Isoelectric point8.13
Molecular weight85281.39
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27203
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     176.38|      58|     231|      17|     124|       1
---------------------------------------------------------------------------
   30-   90 (93.79/64.53)	ESSLQPVVlHQIFGNPTSSFGGQAPVQtVW.QTKVNKsIPPTSD..FKSQQTPATGPTSERNTS
  159-  171 ( 2.30/33.84)	...................................................TPAFSSTSCCSAS
  367-  422 (80.28/26.36)	QSSASPAT.SQGGQSGTTSSTGSTQMQ.AWvQGAIAK.ISSTTDgvPNSTPNPINGPPS.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.47|      13|     114|     331|     343|       2
---------------------------------------------------------------------------
  331-  343 (26.18/14.24)	HFITRLRRYASFC
  446-  458 (26.30/14.33)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.64|      11|      25|     433|     443|       5
---------------------------------------------------------------------------
  433-  443 (20.99/11.20)	FPGTPAVRLIG
  461-  471 (20.64/10.90)	FRRTQLPRVIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.98|      13|      25|     205|     218|       6
---------------------------------------------------------------------------
  205-  218 (18.48/15.40)	KERRKWGcVSLNSV
  233-  245 (24.50/14.04)	QHRQQYG.PSLDRI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27203 with Med16 domain of Kingdom Viridiplantae
Unable to open file!