<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27198

Description Uncharacterized protein
SequenceMQRYHAPNCNSAVNSNAIGGPSARDSARADSSSLSANFSLNSRRQSQLTPYKLKCDKESLNSRLGPPDFHPQTSTCPEETLTQEYVQHGYRETVVGLEDAREIALTQIQAFSKPTVLKCKEAIRKRLRAINESRAQKRKAGQVYGVPLSGSLLTKPCVFPEQRPCGEDFRKKWIEGLSQHHKRLRSLADHVPHGFRKKNLFEVLIRNNVPLLRATWFIKVTYLNQVRPASASISSGSPDKIQLSRTELWTKDVIDYLQGLLEEFFSRNNSHSTQHSRDKSQQILYAGSIQHKSDPVSGLDSEEPSLHFKWWYVVRILQWHHAEGLILPSLIIDWALRQLQDKELLEILQLLLPIIYGVIETVVLSQTYVRTLVGVAVRFIKEPSPGGSDLVDNSRRAYTSSALVEMLRFLILAVPDTFVALDCFPLPPCVVSHVANDGSFLTKVSEDTIKIKNRPAEVPTVLRDKVLDGQYPSLSFDHIVSSIQKRADNLAKAASPGYPCHSEAKAVQALDKALVDGDVRGAYKFLFDDHCDGAVNEGWIAEVSPCLRSSLKWIGTVSSSLVCSVFFLCEWATCDFRDFRTAPPHDMKFTGRKDFSQVYIAIRLLKLKLRDVQNPGCCKNNSTAGINTLAKGSSQPNNNSGRISVVNAYENKNNLKNMDRASIDSLDIFQSPGPLHDIIVCWIDQHEAHKGEGFKRLQLLIMELARSGIFYPQVYVRQLIVSGIMDRYGPIVDLDRRKRHYRILKQLPGSYMRDALEGAQVTEVGLLSDAILIYSNERRLVLQGLLWDQYKSKNIASISSRRPKHLPVSARDGASPASLPNSSTTSADTGLDESQGSVKKSVGSNCNKMDLVEGTPGCEECRRAKRQKLSEDRSSYQGHSPNPSDDEDTWWVRKGPKSSESFKIDPPLKAAKQTSRGRQKIVRKTQSLAQLAAARIEGSQGASTSHVCDNRISCPHHRTGMEGEAPKSIDEVKATHCSDIVSIGKALKQLRFMEKRTITMWLATVVRQFVEENEKTVAKGGQFSRPFSVDDRSSLRWKFGEEELSSTLYLMDVCNDLVSAAKFLLWLLPKVLSNPSSTIHGGRSIMMLPRNVESHACEVGEAYLLSSIRRYENILVATDLIPETLSATVLRAAAVMASNGRVSGSLALVYARYLLKKYGNVSSVIEWERHFKSTGDKRLISELESGRSLEGEFGFPLGVPAGVEDLDEFFHQKISHTRVSRVGLSMKDIVQRNVDDALHYLFGKERKLFAPATPKAPAIEKWDDGYQIAQQIVIQLMECIRQTGGAAQEGDPSLVSSAVSAIVCNVGPSMAKLPDFSAGNNYLNFPSTTSSLNFARRILRIHITCLCLLKEALGERQSRVFEIALAAEASSALATAFAPVKAPRSQFQLSPEAHDSNASMSNEILNNSAKLGRATKILAAVSALVIGAVIHGVISLERMVTVFRLKEGLDVIQFIRSTRSNSNGNPRSLGAFKVDNSVEVCVHWFRLLIGNCKTVCDGLVVDLMGEPSIVALSRMQRTLPLNLVFPPAYSIFSFVVWRPFILNANITNREDIHQLYQSLTLAISDAIKHLPFRDVCMRDTHGFYDLVAADASDSEFAAMLELNGPDLHLRAMAFVPLRARLFLNAIIDCKMPNTSLTQDDVSWVSGHAESKVPYAENETKLLDKLVHILDTLQPAKFHWQWVELRLLLNEQALVEKVDNHDVSLAEAIHSMSPNPEKAVASENENNFILIILTRLLARPYAAALFSEVVHLFGRSLEDSTLLQAKWFLVGQDVLFGRKSIRQRLINIAESKGLSTKVQFWKPWGWSYSSLDPVATKGDKKKFEVTSLEEGEVVEEGTDSKRYAKGSTQMSDFDGFNVSQQHATERALVELVLPCIDQSSDDSRNAFASDLIKQMHIIEQQINTVTRGTTKQAGTVLSGVEGPANKGNNRKGMRGGSPGLARRPTGVADSAPPSPAALRASMALRLQFLLRLLPIICAEGEQSRNMRQSLASVILRLLGSRVVHEDADLSLYSTQSPPSKREAESLMEASTAASLDLSGESLFDRLLLVLHGLLSSCQPSWLKSKSASKSTTESIKEFSGFDREAAENLQNDLDCMQLPDTIRWRIQAAMPILVPSGRCSISCQPPSVSSAAVASLQPSLSFPAFHPGNTNQSQRNSSSLVRPGKLKNMPLQQDHDIEIDPWTLLEDGAGAGPSSGNTAVIGSGDHANLRASSWLRGTVRVRRTDLTYIGAVDDDS
Length2235
PositionKinase
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.07
Grand average of hydropathy-0.254
Instability index48.33
Isoelectric point8.65
Molecular weight247407.27
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27198
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.53|      55|      63|    2046|    2102|       1
---------------------------------------------------------------------------
 2046- 2102 (86.81/61.57)	LLVLHGLLS.SCQPSWLkSKSASKSTTESIKeFSGFDREAAENLQNDLDCMQLPDTIR
 2111- 2166 (92.72/57.25)	ILVPSGRCSiSCQPPSV.SSAAVASLQPSLS.FPAFHPGNTNQSQRNSSSLVRPGKLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.68|      29|     415|     714|     742|       2
---------------------------------------------------------------------------
  714-  742 (51.92/37.22)	VYVRQLIVSGIM.DRYGP..IVDL.DRRKRHYR
  778-  805 (16.73/ 6.23)	...RRLVLQGLLwDQYKSknIASIsSRRPKH..
 1149- 1172 (42.04/28.52)	VYARYL.....L.KKYGN..VSSV.IEWERHFK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.35|      45|     415|     119|     170|       3
---------------------------------------------------------------------------
  119-  166 (69.67/41.95)	CKEAIRKRLraINESRAQKRKAGQVYGVpLSGSLLTKPCVFPEQRPCG
  531-  575 (80.68/39.77)	CDGAVNEGW..IAEVSPCLRSSLKWIGT.VSSSLVCSVFFLCEWATCD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.25|      30|      63|     809|     839|      13
---------------------------------------------------------------------------
  809-  839 (45.74/26.87)	SARDGASPASLPNSSTTSADTGlDESQGSVK
  874-  903 (57.52/30.76)	SSYQGHSPNPSDDEDTWWVRKG.PKSSESFK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27198 with Med12 domain of Kingdom Viridiplantae
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