<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27197

Description Uncharacterized protein
SequenceMAVKNRAVMILQLFVLEFLFGTALAAENSQKLGTVIGIDLGTTYSCVGVYRNGHVEIIANDQGNRITPSWVSFTNTERLIGEAAKNQAALNPERTIFDVKRLIGRKFDDPEVQRDIKFLPYKVVNKEGKPYIQVTIRDGEIKVFSPEEISAMILGKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKAEKNILVYDLGGGTFDVSILAIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYDKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDINEIVLVGGSTRIPKIQQMLKEMFDGKEPCKGVNPDEAVAYGAAVQGGILSGEGGEETGGILLLDVAPLSLGIETVGGVMTKLIPRNTVIPTKKSQIFTTYQDQQPTVSIKVYEGERSLTKDCRELGRFELSGIPPAPRGVPQIEVTFEVDANGILHVRAEDKAAKKSQSITITNDKGRLSQEEIDRMVKEAEEFAEEDRQVKERIDARNKLETYLYSMRATINDRDKLADKIDSEDKEKIEAALKEALDWLDDNQNADKDEYNEKLRGVEAVCNPVIKQVYEEWWGFFQF
Length649
PositionUnknown
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.07
Grand average of hydropathy-0.377
Instability index29.86
Isoelectric point5.34
Molecular weight72361.73
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
endoplasmic reticulum chaperone complex	GO:0034663	IBA:GO_Central
endoplasmic reticulum lumen	GO:0005788	IBA:GO_Central
membrane	GO:0016020	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
endoplasmic reticulum unfolded protein response	GO:0030968	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central
ubiquitin-dependent ERAD pathway	GO:0030433	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27197
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.60|      25|      27|     577|     601|       1
---------------------------------------------------------------------------
  556-  575 (18.83/ 6.95)	.....E..DR.QVKERIDARNKlET.YLY
  577-  601 (39.27/21.46)	MRATIN..DRDKLADKIDSEDK.EK.IEA
  603-  630 (28.50/13.82)	LKEALDwlDDNQNADKDEYNEK.LRgVEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.55|      15|      17|      91|     106|       3
---------------------------------------------------------------------------
   68-   83 (22.60/ 9.30)	PSWVSFtNTERLIGEA
   92-  106 (27.96/19.64)	PERTIF.DVKRLIGRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.07|      14|      17|     313|     328|       7
---------------------------------------------------------------------------
  313-  328 (19.74/19.44)	ESLfdGID.FSE...PLTRA
  331-  348 (15.33/ 6.93)	EEL..NMDlFKKtmgPVKKA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27197 with Med37 domain of Kingdom Viridiplantae
Unable to open file!