<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27179

Description Uncharacterized protein
SequenceMESSWRRRGSLIVAAIVCFGFLAAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNAERTIFDVKRLIGRKFEDKEVQKDMKLVPYNIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLYDGLDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKRQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAFGAAVQGSILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRQLGKFDLNGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGAPGAGSDGGEDDDSHDEL
Length667
PositionUnknown
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.06
Grand average of hydropathy-0.472
Instability index30.50
Isoelectric point5.10
Molecular weight73580.40
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
endoplasmic reticulum chaperone complex	GO:0034663	IBA:GO_Central
endoplasmic reticulum lumen	GO:0005788	IBA:GO_Central
membrane	GO:0016020	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
endoplasmic reticulum unfolded protein response	GO:0030968	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central
ubiquitin-dependent ERAD pathway	GO:0030433	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27179
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.57|      19|      20|     591|     609|       1
---------------------------------------------------------------------------
  591-  609 (29.79/16.75)	LA..DKLESDEKEKIETAVKE
  611-  631 (24.78/12.82)	LEwlDDNQSAEKEDYDEKLKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     650.23|     181|     193|     174|     366|       2
---------------------------------------------------------------------------
   11-  171 (182.91/123.95)	..........................LIVAAIVCFGFLAAISIA.......KEEATKL..GTVIGIDL.GTTYSC.V.....GVY.K....NGHVEIIAND.Q....GNRITPSWVAFTDSERLIGEAAKNQAAVNAERTI.FDVKRLIGrkfEDKEVQKDMKLVpYNIVnkD.GKPYIQVKIKDGETKVFSpeeiSAMILTKmK..ETAEAF.LGKK...
  174-  364 (264.05/223.60)	DAVVTVPAYFNDaqRQATKdaGViagLNVARIINEPTAAAIAYG.......LDKKGGE..KNILVFDLgGGTFDVSILTIDnGVF.EVLATNGDTHLGGED.F....DQRIMEYFIKLIKKKHGKDISKDNRALGKLRREA.ERAKRALS...SQHQVRVEIESL.YDGL..DfSEPLTRARFEELNNDLFR....KTMGPVK.K..AMEDAG.LEKRQID
  377-  548 (203.28/138.13)	KVQQLLKDYFDG..KEPNK..GV..........N.PD.EAVAFGaavqgsiLSGEGGDetKDILLLDV..APLTLGIETVG.GVMtKLIPRNTVIPTKKSQvFttyqDQQ.TTVSIQVFEGE..RSLTKDCRQLGKFDLNGiPPAPRG.T...PQIEVTFEVDA...NGI...............LNVKAED....KGTGKSE.KitITNDKGrLSQEEID
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27179 with Med37 domain of Kingdom Viridiplantae
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