<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27173

Description Uncharacterized protein
SequenceMATNSGALDQWRNYFRTANSDIFGIIEHAILVAASDCPKEFRLRRDRIAERLFSCKLTRCFGCDRVELAVPENDGGGCKIEFDMDACQFEAGGSGSKESKVNSSSKESKANSIREDHGEMNMNQVSNYSYGEAEALTDEIEEETQIAGEVLRIREILEHSKDESDSVLFDSLRRLQLMVLSVDNLKATEIGKAVNGLRKHGSKQIRQLARTLIDEWKDMVDEWVNATAAIAEGTPDSVNPSVVDDDDDEEGLPFPPMDELSFLTTQPTSLELSQFFDGMDDDGNPRNNGEFNRNRENGRKPALENQNISKRKQQLPDEANGVTKDKGQQIKKQEPVVKSNKPINTQSGFGRPQEILVRPNRPSNTDSGPGRPPKPGVGQKVNNETKFLQKSDKPAIHRKPVVGQQDKSKSSEEDTIQVKLEAAKRKLHERYQQAEDAKRQRTIQVMELQDLPKQGLGHRNPHIRHGNNNRHWANGRR
Length477
PositionUnknown
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.05
Grand average of hydropathy-0.967
Instability index44.38
Isoelectric point5.93
Molecular weight53636.03
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27173
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     168.40|      49|      49|     294|     342|       1
---------------------------------------------------------------------------
  294-  326 (45.52/21.78)	....................NRENG...RKPALENQNISKRKQ....QLPDEANGVTKDK
  327-  373 (71.51/37.97)	GQQIKKQEPVV.KSNKPintQSGFG...R.P....QEILVRPN....RPSNTDSGPGRPP
  378-  426 (51.37/25.42)	GQKVNNETKFLqKSDKP........aihRKPVVGQQDKSKSSEedtiQVKLEA...AKRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.71|      56|     170|      64|     121|       2
---------------------------------------------------------------------------
   64-  121 (91.72/52.96)	DRVELAVPENDGGGCKIEF.DMDACQFEAGGSGSKESKVNSSSKESKANSirEDHGEMN
  236-  292 (94.98/49.96)	DSVNPSVVDDDDDEEGLPFpPMDELSFLTTQPTSLELSQFFDGMDDDGNP..RNNGEFN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27173 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ELSQFFDGMDDDGNPRNNGEFNRNRENGRKPALENQNISKRKQQLPDEANGVTKDKGQQIKKQEPVVKSNKPINTQSGFGRPQEILVRPNRPSNTDSGPGRPPKPGVGQKVNNETKFLQKSDKPAIHRKPVVGQQDKSKSSEEDTIQVKLEAAKRKLHERYQQAEDAKRQRTIQVMELQDLPKQGLGHRNPHIRHGNNNRHWANGRR
2) TAAIAEGTPDSVNPSVVDDDDDEEGLPFPPMDELSFLTTQ
271
227
477
266










Molecular Recognition Features






MoRF SequenceStartStop




1) TIQVKLEAAKRKL
2) TKFLQKSDKPAIHRKPVV
415
385
427
402