<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27167

Description Uncharacterized protein
SequenceMAPLLKDASVEFPRDVRKCNLQSSHNTNNQYLEHNLPHQNLGETNSSYSETASCRGNSFRSGSACAENAGREGGQNETKPSMLYNSHIQVVGQSSGTCNVHTGQVKELVGAFPNGTDDDDILEDIDVDQIVMEHYQSTCTPQPSISKLPPVTPTLSTVNIAKHEETFLPLELCSNCSHGFKLGLCPEAANHLQELKDMLIVISNELLDNVDLTSVQVEKLRQDRLYLNKQIQQLEIHLHSVSVDEERKNSNFSASTTTPWAQFQTPPATAVGIDPMRFDAQVHLRNEPGNYEKWNTSSVSFSSIDRFGVTPYPLEREPYIPKLIEVNYIEGSSDKKWSSGNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALISPGITLVISPLVSLIQDQIMHLLQANIPAAYLSASMEWNEQQEILRELSSCKYKLLYATPEKVAKSDVLMRNLDNLHARELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVLPKTRKCLDDIDKFIRENHFDECGIIYCLSRLDCEKVAERLQECGHKAAFYHGSMDPARRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMITQGVVEQSPLASGQNRSNMASSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCLKIKSFVEKDVTEIAKQLVELVKLTREQFSSSHILEVYRGSLSQYVKKHRHETLGLHAAGKHLAKGEASRILRHLVTEDFLMEDVKKSDIYGSVSSVLKVNESKVYKLFSGGQKIILRFPSSAKSSKLSNFEATPAKGSLTSGKLSPPRIETPAHLPEVDLNLSAKLYSALRILRTVLVKEAGEGVMAYHIFGNATLQQISKRIPRTKEELLEVNGIGKAKISKYGDRVLETIESTIKEYYKTDKNSSSSNDSTDTIKRRRESAKVLDANPEDDDFTKSTDRSRGRAMKRHNKGGEANNTRETDYYNQCIDDDLDFDDANCDVAINGSAPKVDRDGARRTLPSWSTPSNKGHDQHLNMFQEYSFKGTHIKAGKMKDVGQFAVAIEFVLVFLL
Length1157
PositionUnknown
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.07
Grand average of hydropathy-0.473
Instability index44.06
Isoelectric point7.09
Molecular weight129855.54
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP27167
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.73|      15|      18|     887|     901|       2
---------------------------------------------------------------------------
  887-  901 (26.18/13.21)	SAKSSKLSNFE.ATPA
  904-  919 (23.55/11.25)	SLTSGKLSPPRiETPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.08|      47|      96|     541|     587|       3
---------------------------------------------------------------------------
  541-  587 (88.19/52.87)	C..................................IIFRQSFNRPNLWYSV...LPKTRK.CLDDIDKFIRENHFDECGIIYCLS
  601-  685 (58.89/33.03)	CghkaafyhgsmdparrafvqkqwskdeiniicatVAFGMGINKPDVRFVIhhsLPKSIEgYHQECGRAGRDGQRSSCVLYYSYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.24|      20|      21|    1026|    1046|       4
---------------------------------------------------------------------------
 1026- 1046 (29.30/25.26)	RESA.KVLDANPEDDDfTKSTD
 1049- 1069 (30.94/20.57)	RGRAmKRHNKGGEANN.TRETD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.06|      21|      21|     771|     791|       5
---------------------------------------------------------------------------
  771-  791 (32.04/24.14)	FVEKDVTEIAK.QLVELVKLTR
  794-  815 (31.01/23.11)	FSSSHILEVYRgSLSQYVKKHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.82|      17|      23|     958|     974|       7
---------------------------------------------------------------------------
  958-  974 (28.30/18.08)	GNATLQQISKRIPRTKE
  983-  999 (27.52/17.39)	GKAKISKYGDRVLETIE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27167 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DVRKCNLQSSHNTNNQYLEHNLPHQNLGETNSSYSETAS
2) YYKTDKNSSSSNDSTDTIKRRRESAKVLDANPEDDDFTKSTDRSRGRAMKRHNKGGEANNTRETD
15
1005
53
1069










Molecular Recognition Features






MoRF SequenceStartStop




NANANA