<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27164

Description Uncharacterized protein
SequenceMGQGVPSNMFANSQRQSQGRPQVVPQQQQQQSQSSQQYIYQQQLQHHLLKQKYQQQQQQQTLLQSNQFQSSQQSVMQTSSGMQSAPLSGLQQNQPSSVQQSSQSVLQQHPPAVLRQQQQPQQTPVMHQQQTSMTQQPILPSQQQQQLIGQPPNATTMQSNQLIGQQNSFSDLQQQQQQQQQRLLSQQNNLPNLQQQQQQQQHQLMAQQSNLSNIHQQQLGHQSNVSALQQQQQMLGTQSGNPSMQTNQHPVHILQQSKVPVQQQTQQGVSNLLATQGQQSQQQPSQQQLMSQFQSQSTQLQPQPNSLQRDMQQRLQTSGALLQTQNVIDQQKQLFQSQRALPEASSTSLDSTAQTGTINVGDWQEEVYQKIKRMKEMYLPDLNEMHQKIAAKLQQHDSLPQQPKTEQLEKLKIFKAMLERMITVLQLSKNSITPNFKEKLIGYEKQIVSFINTHRPRKPVPPLQHGQSSVSHMHSMQQPQQSQSQLSQGQPHENQMNPQLQPMNLQGSVATMQQNNVPSLQPSSMPSLSGLPNAQQNIMNSLQSSANLDSGQGNALTSLQQAAVGALQQNPVSAPQQANINNLSSQNGVNVLQQNINQLQPNSNMLQHQHLKQQQEQMMQTQQLKQQMQQRQMQQQLMQKQQLMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLHQQTKQQQPAQLQAHQMSQPHQMNDVNDLKMRQGMSANKPGVFHQHQGAVQRSAYPQQLKSGTSFPISSPQLLQTASPQIPQHSSPQIDQQNLLTSLTKAGTPLQSANSPFVVPSPSTPLAPSPMPGESEKLNSGISLITNAGNIGHHQTTGALAPPPSLAIGTPGISASPLLAEFTSLDGNHGNASTMVSGKSSVTEQPLERLIKVVKLMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITLDGAAGTRKMRRYTSAMPLNVVSSAGSVNDSFKQLAGSETSDLESTATSSAKRPRIEVNHALLEEIREINQRLIDTVVDISHEDVDPAAAAAAAAEGGEGTIVKCSFSAVALSPNLKSQYTSTQMSPIQPLRLLVPTNYPNSSPILLDKFPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARAVISEYAQQSGGGSFSSRYGAWENCLSAA
Length1187
PositionTail
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.03
Grand average of hydropathy-0.849
Instability index82.51
Isoelectric point9.41
Molecular weight131658.32
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27164
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.40|      16|      16|     645|     660|       1
---------------------------------------------------------------------------
  646-  661 (36.13/ 6.98)	QQQQQQQQQQQQQQQQ
  662-  677 (36.13/ 6.98)	QQQQQQQQQQQQQQQQ
  678-  693 (36.13/ 6.98)	QQQQQQQQQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.27|      31|      35|      26|      58|       3
---------------------------------------------------------------------------
   14-   55 (36.93/ 6.14)	QRQsqgrpqvvpQQQQQQSQSSqqYIYQQQ...LQHHLLKQKYQQ
  107-  145 (46.34/ 6.53)	QQH....ppavlRQQQQPQQTP..VMHQQQtsmTQQPILPSQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     200.59|      53|      55|     499|     552|       5
---------------------------------------------------------------------------
  467-  504 (58.47/11.02)	QSSVSHMHS..MQQPQQSQSQLSQ...GQP..HENQMN.............pQLQPMN
  506-  560 (79.14/15.91)	QGSVATMQQNNVPSLQPSSMPSLS...GLPNAQQNIMNSLQSSANLDSGQgnALTSLQ
  561-  609 (62.98/11.88)	QAAVGALQQNPVSAPQQANINNLSsqnGVNVLQQNI.NQLQPNSNMLQHQ........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     180.87|      48|      48|     254|     301|       6
---------------------------------------------------------------------------
  171-  259 (56.88/11.96)	DLQQQQQQQQQRLlsqqnnlpnlqqqqqqqqhqlmaqqsnlsnihqqqLG.HQ.......SNVSALQQQQQMLGTQSG.NPSMQTNqhpvhiLQQSKV
  260-  310 (65.63/15.36)	PVQQQTQQGVSNL...................................LA.TQ.......GQQSQQQPSQQQLMSQFQ.SQSTQLQ.pqpnsLQRD..
  698-  754 (58.36/12.54)	QLHQQTKQQQPAQ...................................LQaHQmsqphqmNDVNDLKMRQGMSANKPGvFHQHQGA......VQRSAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.68|      12|      26|      63|      74|       7
---------------------------------------------------------------------------
   63-   74 (22.74/ 7.85)	LQSNQFQSSQQS
   90-  101 (22.94/ 8.01)	LQQNQPSSVQQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.98|      39|      39|     759|     797|       8
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  759-  797 (66.96/28.86)	KSGTS.......FPISSPQLLQTASPQIPQHSSPQIDQQNLLT...SLT
  798-  845 (50.76/19.95)	KAGTPlqsanspFVVPSPSTPLAPSP.MPGESEKLNSGISLITnagNIG
  846-  876 (50.25/19.67)	HHQTT.......GALAPPPSLAIGTPGI..SASP......LLA...EFT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.11|      16|      17|     407|     422|       9
---------------------------------------------------------------------------
  411-  429 (19.94/ 8.80)	LKIFKAMLERMItvlQLSK
  430-  445 (22.17/10.69)	NSITPNFKEKLI...GYEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.26|      17|      17|     365|     381|      10
---------------------------------------------------------------------------
  365-  381 (30.80/18.90)	EEVYQKI..KRMKEMYLPD
  383-  401 (26.46/15.07)	NEMHQKIaaKLQQHDSLPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.86|      55|      72|     992|    1050|      11
---------------------------------------------------------------------------
  992- 1050 (78.41/61.27)	VNDSFKQLAGSetSDLESTATSSAKRPrIEvNHALLEEIREINQR..LIDTV.VDISHEDVD
 1067- 1124 (87.45/53.39)	VKCSFSAVALS..PNLKSQYTSTQMSP.IQ.PLRLLVPTNYPNSSpiLLDKFpVEISKEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.51|      12|      17|     906|     917|      19
---------------------------------------------------------------------------
  906-  917 (19.57/14.83)	VVKLMSPKALSA
  925-  936 (19.94/15.26)	VVSMIDRIAGSA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27164 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) INTHRPRKPVPPLQHGQSSVSHMHSMQQPQQSQSQLSQGQPHENQMNPQLQPMNLQGSVATMQQNNVPSLQPSSMPSLSGLPNAQQNIMNSLQSSANLDSGQGNALTSLQQAAVGALQQNPVSAPQQANINNLSSQNGVNVLQQNINQLQPNSNMLQHQHLKQQQEQMMQTQQLKQQMQQR
2) MGQGVPSNMFANSQRQSQGRPQVVPQQQQQ
3) PLQSANSPFVVPSPSTPLAPSPMPGESEKLNSGISLITNAG
4) QQQQQQQLHQQTKQQQPAQLQAHQMSQPHQMNDVNDLKMRQGMSANKPGVFHQHQGAVQRSAYPQQLKSGTSFPISSPQLLQTASPQIPQHSSPQIDQQNLLTSLTKAG
5) QTLLQSNQFQSSQQSVMQTSSGMQSAPLSGLQQNQPSSVQQSSQSVLQQHPPAVLRQQQQPQQTPVMHQQQTSMTQQPILPSQQQQQLIGQPPNATTMQSNQLIGQQNSFSDLQQQQQQQQQRLLSQQNNLPNLQQQQQQQQHQLMAQQSNLSNIHQQQLGHQSNVSALQQQQQMLGTQSGNPSMQTNQHPVHILQQSKVP
6) TQQGVSNLLATQGQQSQQQPSQQQLMSQFQSQSTQLQPQPNSLQRDMQQRLQ
451
1
802
692
60
265
631
30
842
800
260
316










Molecular Recognition Features






MoRF SequenceStartStop




1) QQYIYQQQ
36
43