<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27162

Description Uncharacterized protein
SequenceMSVSSSPKMGPTTLWMPSNPSFPVPSGMPVTPGTPGPPGIAPSTPLSSNLAVPSASMDFSSSVVSRAIFPAAPVSSNPAIQQQIYPSYSSLPATNASSQGPWLQPPQMGGLPRPPFVPYPAVYPTPFPLPAHGMPLPSVPLPDSQPPGVTPVGTAGGTPISAAVSGHHLANTSGMLSELPPPGIDDNKHVNGAGTKDGAAVNEQVDAWTAHKTDTGVVYYYNALTGESTYEKPSDFKGEADKVTVQPTPVSWEKLTGTDWALVTTNDGKKYYYNTKTKLSSWQIPTELTEMRKKQDSVALKEHAMLAPNTNVSTEKGPSPIALSAPAVTTGGRDATPLRTSAVPGSASALDMIKKKLQDSGAPATSSPVHSSGPIASELNGSRVIEPTVKGLQSENSKDKLKDTNGDGNMSDSSSDSEDVDSGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPGYSARRSLFEHYVRTRAEEERKEKRAAQRAAIEGFKQLLEEASEDIDHKTEYQTFRKKWGDDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAVSSFKSMLRDKGDITTSTRWSRVKDSLRNDPRYKCVKHEDREILFNEYISELKAAEEEVEREAKSKKEEQDKLKERERELRKRKEREEQEMERVRLKVRRKEAVSSYQALLVETIKDPQVSWTESKPKLEKDPQARATNSDLDPSDLEKLFREHIKMLHERRAHEFRALLSEVLTAEAATQETEDGKTVLTSWSTAKRLLRSDTRYIKMPRKDRESVWRRYSEEMLRKQKLAQDQTEEKHTEVKGRSSVDSGRFPSGSRRAHERR
Length829
PositionUnknown
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.06
Grand average of hydropathy-0.813
Instability index54.47
Isoelectric point8.81
Molecular weight92106.50
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27162
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     233.39|      35|      66|     430|     464|       1
---------------------------------------------------------------------------
  438-  504 (35.74/14.46)	KE..RG.V.APFSKWEKELPKIVFDPRFK.A....IpgysarrslfehyvrtraeeerkekraaqraaI....................EGFK.........Q.LL
  505-  542 (40.58/17.29)	EEasED.I.DHKTEYQTFRKKWGDDPRFE.A....L................................D....................RKDR.........ElLL
  543-  572 (26.77/ 9.23)	NE..R..V.LPLKRAAEE........KAQ.A....I............................raaaV....................SSFK.........S.ML
  573-  618 (29.60/10.88)	RD..KGdI.TTSTRWSRVKDSLRNDPRYK.C....V....................khedreilfneyI....................SELK.........A...
  640-  675 (31.18/11.80)	RE..RE.LrKRKEREEQEMERVRLKVRRKeA....V.....................................................SSYQ.........A.LL
  676-  734 (30.63/11.48)	VE..TI.K.DPQVSWTESKPKLEKDPQAR.AtnsdL................................DpsdleklfrehikmlherraHEFR.........A.LL
  748-  790 (38.90/16.31)	ED...G.K.TVLTSWSTAKRLLRSDTRYI.K....M................................P....................RKDResvwrryseE.ML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     158.66|      32|      34|     133|     164|       2
---------------------------------------------------------------------------
   37-  104 (21.74/ 6.92)	PPGIAPS...TPL.SSnlAV.......psasmdfsssVV.SraiFPA.APvssnpaiqqqiypsyssLPatnaSSQGPW......LQ
  105-  125 (28.77/12.03)	P.PQMGG................................lP...RPPfVP.................YP....AVYP.........T
  126-  150 (47.15/25.42)	PF.........PL.PA....................hGM.P...LPS.VP.................LP....DSQPPG......VT
  151-  191 (36.31/17.53)	PVGTAGG...TPI.SA..AV........sghhlantsGM.....LSE.LP..........................PPGiddnkhVN
  326-  374 (24.70/ 9.07)	PAVTTGGrdaTPLrTS..AVpgsasaldmikkklqdsGA.P...ATS.SP.................VH....SSGP..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.66|      17|      34|     206|     226|       3
---------------------------------------------------------------------------
  206-  226 (26.79/26.40)	DAWTAHKTDTGvvyyYNALTG
  241-  257 (29.86/17.71)	DKVTVQPTPVS....WEKLTG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27162 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EEEVEREAKSKKEEQDKLKERERELRKRKEREEQEMERVR
2) EMRKKQDSVALKEHAMLAPNTNVSTEKGPSPIALSAPAVTTGGRDATPLRTSAVPGSASALDMIKKKLQDSGAPATSSPVHSSGPIASELNGSRVIEPTVKGLQSENSKDKLKDTNGDGNMSDSSSDSEDVDSGPTKEECII
3) HGMPLPSVPLPDSQPPGVTPVGTAGGTPISAAVSGHHLANTSGMLSELPPPGIDDNKHVNGAGTKDGAAVNEQVDA
4) KQKLAQDQTEEKHTEVKGRSSVDSGRFPSGSRRAHERR
5) SPKMGPTTLWMPSNPSFPVPSGMPVTPGTPGPPGIAPSTPLSSN
620
290
132
792
6
659
431
207
829
49










Molecular Recognition Features






MoRF SequenceStartStop




1) LDMIKKKL
350
357