<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27160

Description Uncharacterized protein
SequenceMAKPSKCGKNKTQKRVTALNRELPPRNEQFLLDFGQLQSQFSDQDQLRSVTESILISLVVPCSGHAPRAEFLLFALRSLCSIGYINWDTFLPSLLSSVSSAEMSVGQGNQAVTSVSSTSLSPSGMLPSSSTIHNSSTFQSSNPASPLPSVHGISSPAQSATDPSPCVALSPVKSSDISCSGQQSTMRVNSTIRDNTLSCLRQLCCKIILTGLDFNLKPVTYAEIFNHMLNWLVNWDQRQQESDVAKSWRPDKALIEWLHSCLDVIWLLVEEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLQCPTFGTHRFLSQTTSPISGEAVANLRYSPIMYPSVLGEPLHGEGDSRFLGVIERFLFEPQGQTTKREQGDRVVWKGDS
Length402
PositionTail
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.07
Grand average of hydropathy-0.223
Instability index68.75
Isoelectric point6.07
Molecular weight44824.55
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27160
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.13|      15|      16|     132|     146|       1
---------------------------------------------------------------------------
  132-  146 (27.88/14.04)	IHN.SSTFQSSNPASP
  150-  165 (22.25/ 9.82)	VHGiSSPAQSATDPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.40|      18|      33|      75|      93|       2
---------------------------------------------------------------------------
   62-   79 (30.05/17.84)	CS.GHAPRAEFLLFALRSL
   80-   98 (29.35/21.89)	CSiGYINWDTFLPSLLSSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.19|      19|      38|     314|     334|       4
---------------------------------------------------------------------------
  314-  334 (34.26/31.69)	MHMQMLDQHLQCPtfGTHRFL
  355-  373 (35.93/25.14)	MYPSVLGEPLHGE..GDSRFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.85|      13|      18|     170|     182|       5
---------------------------------------------------------------------------
  170-  182 (23.17/12.63)	SPVKSSDISCSGQ
  190-  202 (22.68/12.23)	STIRDNTLSCLRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27160 with Med23 domain of Kingdom Viridiplantae
Unable to open file!