<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27159

Description Uncharacterized protein
SequenceMEDLANSIQRGSLDWERALRCIRHALRTTPSPDWWKRVLLVAPCYRSHPQGPSAGAVFTSEMICEATIDRIVELLKLTNSDINCWQEWLVFSDIFFFLMKNGCIDFVDFVDKLILRLIEGDNHILRTNHVTWLLAQIIRVELVMNALTSDPRKMETTRKILSFHKEDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRLANKGERMMDYVTLDDRSIGMFWVMSYTMAQPACDTVMNWFSSAGAAELIPGSHLQSNERVMVMKEISPLPMSLLSGFSLHLCMKLAFQMEDSLFSGQVVPSIALVETYTRLLLIAPHSLFRSHFSHLSQRYPAILSKPGATLLVLEILNYRLLPLYRYQGKGKTLMYDVTKIVSALKGKRGDHRAFRLAENLCMNLILSLRDPFQVKKEGKGPTEFTETLNRITIITLAIIIKTRGIAEADHLPYLQTMLEQIMATSQHTWSEKTLRYFPSLLREAMIGRIDKKNLAIQAWQQAETTVIAQCTNLLLSSGDPSYVMTYISHSFPQHRRYLCAAACMLMHGHPDNINVANLARVLREFSPEEVTSNIYTMVDVLLHHIHMELQHGHSLQDLLSKACANLAFFIWTNELLPLDILLLALIDRDDDSHALRIVISLLDKQELQQRVKLFCNNRGSPEHWLCSGMFKRADLQKALGNHLSWKERYPVFFDDAAARLLPVIPLVVYRLIENDATDQADRVLAMYSQLLAYHPLRFTFVRDILAYFYGHLPGKLTVRILNILDLGKIPFSESFLKHMSSSNPVICPPLDYFATLLLGLVNNVIPPINTNSKSGSMGDTSNNTLRAPHNKTPAASQSGPTNASEGQKSFYQTQDPGTFTQLVLETAVIEILSLPVPATQIVSSLVQIIVHIQSTLIQSSNGLHGPPNGVGQGSVLPTSPSGGSTDSLSASRSSASVSGINASNFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHKQLYIEASCLIKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLEGTHLIIKHLRPVTSVAMLRIAFRIMGPLLPRLSNAHSLFNKTLSLLLNTMVDVFGRNSQPATPVEASEIADLIDFLHHAVHYEGQGGPVQASSKPRPEVLALCGRASESLRPDIQHLLSHLKTDINSSIYAATHPKLVQNPS
Length1199
PositionTail
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.08
Grand average of hydropathy-0.027
Instability index44.52
Isoelectric point7.13
Molecular weight134386.58
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27159
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     303.02|      95|     291|     755|     855|       1
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  755-  855 (156.07/117.96)	ILAYFYGHLP.....G.....KlTVRILNILDLGKIPFsesflKHMSSSNPVICPPLDYFATLLLGLVNNVIPPINTNSKSGSMGDTSN..NTLRAPHNKTPAASQSGPTNAS
 1043- 1149 (146.95/96.65)	LLHAFFSNLPqewleGthliiK.HLRPVTSVAMLRIAF.....RIMGPLLPRLSNAHSLFNKTLSLLLNTMVDVFGRNSQPATPVEASEiaDLIDFLHHAVHYEGQGGPVQAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      14|     289|      35|      48|       2
---------------------------------------------------------------------------
   35-   48 (29.65/19.45)	WKRVLLVAP..CYRSH
  327-  342 (22.05/12.48)	YTRLLLIAPhsLFRSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.86|      46|     289|     234|     314|       3
---------------------------------------------------------------------------
  267-  312 (79.91/86.10)	LIPGSHLQSNERVM...VMKEISPL..PMSLLSGFSL..HLCMKLAFQMEDSL
  371-  423 (65.95/24.08)	LLPLYRYQGKGKTLmydVTKIVSALkgKRGDHRAFRLaeNLCMNLILSLRDPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     270.25|      88|     452|     433|     541|       4
---------------------------------------------------------------------------
  445-  541 (131.50/135.83)	ITLAIIIKTRGIaeadHLPYLQTMLEQIMATSQHTWSEKTLRYFPSllrEAMIGRIDKKNLAIQA...wQQAETTVIAQCtNLLLSSGDPSY.VMTYISHS
  903-  995 (138.75/90.65)	IQSTLIQSSNGL....HGPPNGVGQGSVLPTSPSGGSTDSLSASRS...SASVSGINASNFVSRSgytcQQLSCLLIQAC.GLLLAQLPPDFhKQLYIEAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.84|      30|     783|     213|     254|       6
---------------------------------------------------------------------------
  213-  254 (41.17/61.89)	IDE.WWrLANkGERMM.......DYVTLDDRsigmfWVmsytmAQPACDT
  998- 1035 (47.68/30.77)	IKEsWW.LTD.GKRSLgeldsavGYALLDPT.....WA.....AQDNTST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.85|      26|     349|     345|     370|       7
---------------------------------------------------------------------------
  345-  370 (46.76/25.00)	HLS..QRYPAILSKPGATLL.VLEILNYR
  693-  721 (38.09/19.20)	HLSwkERYPVFFDDAAARLLpVIPLVVYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.55|      34|     540|     111|     145|       9
---------------------------------------------------------------------------
  111-  145 (54.70/40.43)	DKLILRLI..EGDNHILRTNhVTWLLAQII..RVELVMN
  630-  667 (47.85/29.82)	DILLLALIdrDDDSHALRIV.ISLLDKQELqqRVKLFCN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27159 with Med23 domain of Kingdom Viridiplantae
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