<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27157

Description Uncharacterized protein (Fragment)
SequenceMSPGSGAKDSEDEPVPQALEVAKGLEKSEVVSVDEEEGEQEEEGEQVVEKTADDPMEEDSVNPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECSVFSVIADSPRDSVQFIEWSPASCPLKFIYRWLSSKTSSSTSLKSPFEEKFLSQQPQTSDRWPNFLCVCSVFSSGSIQLHWSQWPPQNGATSKWFSTAKGLLGAGPSGIMAADAIITDTGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQVIPKSSATNGVPPSLNPPSWAGFSPLAAYLFSWQEFLASEMKQGRKQTDQDFNDAVLLHCSPVSNFSAYVSPETAAQSAATTTWGSGVTAVAFDPTRGGSVIAVAIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSFGGQAPVQTVWQTKVNKSIPPTSDFKSQQTPATGPTSERNTSDSSMDMGKRVSFDPFDLPSD
Length498
PositionTail
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.09
Grand average of hydropathy-0.308
Instability index59.19
Isoelectric point4.76
Molecular weight53744.42
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27157
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     194.81|      59|      87|     348|     408|       1
---------------------------------------------------------------------------
  348-  408 (94.79/48.90)	PVSNFSAYVSPETAAQSAA......TTTWGSGVTAvAFDPTRGGSVIAVAIVEGQYMSpYDPDEGPS
  433-  497 (100.02/44.97)	PTSSFGGQAPVQTVWQTKVnksippTSDFKSQQTP.ATGPTSERNTSDSSMDMGKRVS.FDPFDLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.92|      42|     181|      80|     123|       2
---------------------------------------------------------------------------
   80-  123 (73.06/40.37)	HKMSVPeLCRNFSAVAWC...GKLNAIACASETCAR..IPSSnANPPFW
  260-  306 (69.86/31.84)	HVAGVP.IVNPSTVVVWEvtpGPGNGFQVIPKSSATngVPPS.LNPPSW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.40|      18|      67|     137|     158|       3
---------------------------------------------------------------------------
  137-  158 (29.57/16.41)	CSVFSviadSPRDSVQFIEWSP
  206-  223 (35.84/13.79)	CSVFS....SGSIQLHWSQWPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27157 with Med16 domain of Kingdom Viridiplantae
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