<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27152

Description Uncharacterized protein
SequenceMSTLVKNFPSSKQQALSEVKNIAVRFEEKIYNAATSQKDYLRRISVKMLSIHTAPQNTAANVSPSNSVDTDAISTDPASHSVHSEVLEQEQSPLAPLAPLANQSLAHQEPLSQNLHSNIASYRAQSSISLSSVVPHMTSLTKIPKPNVVGQDVKLQSMSGILPSLVMESVGQGVSSNNTANSWRQVQEQEDFLQPVTWRQFQNPQQFCCEQQLQHQIPNQKFKQESITESAIQTPHAQQQQQQQQQTLLQPNQLLSSQQSVIQTSPIIDISVTQSAPCSGLPQSQQSSVQQQTKSALQQHPQSVVRQQQQPLQAPVIHHQRTVMEQPDGLVDQQTKHSFLQKLQLISGQQNNQSKQQQRQLVRLGNVSGLPRQKKLL
Length377
PositionTail
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.03
Grand average of hydropathy-0.656
Instability index75.41
Isoelectric point9.11
Molecular weight41925.50
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27152
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.14|      14|      15|     279|     292|       1
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  279-  292 (27.69/ 9.78)	SGLPQSQQSSVQQQ
  295-  308 (23.96/ 7.47)	SALQQHPQSVVRQQ
  347-  358 (22.50/ 6.57)	SG.QQNNQSK.QQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     161.19|      26|      28|     210|     235|       2
---------------------------------------------------------------------------
  113-  135 (26.45/ 9.78)	.QNLHSN.....I...ASYR..AQSSISLSSV.V.P
  150-  178 (26.65/ 9.91)	GQDVKLQsmsgiL...PS...LVMESVGQGVSSN.N
  179-  204 (34.88/15.53)	TANSWRQ.....V...QEQEdFLQ.PVTWRQFQN.P
  210-  235 (44.59/22.15)	EQQLQHQ.....I...PNQK.FKQESITESAIQT.P
  240-  266 (28.61/11.25)	QQQQQQQ.....TllqPNQL.L...SSQQSVIQTsP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27152 with Med15 domain of Kingdom Viridiplantae
Unable to open file!