<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27149

Description Uncharacterized protein
SequenceMVSSANYSKDTLVLSFPTMKHSVNPTSSTLIIILLRTSATKAGNVPNPTHQSSSDWQEHTSADGRRYYYNKKTRLSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAEKSVSQETQSEMGTTSNEPAVVAVSLAETPSTASVSVSSTTSSTISGMTSSPVPVTPVVAVVNPPPVVVSGTSAIPIAQSAVTTSAVGVQPSMGTPLPAAVSGSTGVAAAFINPNATSMTSFENLSADATNGASMQDIEEAKKGVAVAGKINVTPLEEKTLDDEPLVYSTKLEAKNAFKALLESANVESDWTWDQAMKAIINDKRYGALKTLGERKQAFNEYLGQRKKIEAEERRMRQKKAREEFTTMLEECKELTSSIKWSKAVDMFQDDERFKAVERSRDREDLFENFIMELQKKERTKALEEQKRNRMEYRQFLESCDFIKVNSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIRDLEREEEEQRKIQKEQLRRAERKNRDEFRKLMEEHVAAGTLTAKTHWRDYCMKVKDSSPYLAVASNTSGSTPKDLFEDVAEELEKQYHEDKARIKDAMKLSKVTIASTWTFGDFKAAILDDVGSPNISDVNLKLVFEELLDRIKEKEEKEAKKRQRLADDFNDLLRSKKEITASSNWEDCKPLFEESQEYRSIGEESFGREIFEEYIAHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDRDREREKGKERSRKDETESENVDVTGSYGYKEDKKREKDKDRKHRKRHQSAVDDASSDKEEKEESKKSRRHGSDRKKSRKHAYTPESDTESRHKRHKREHWDGSRRNGGYEELEDGELGEDGEIR
Length863
PositionUnknown
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.06
Grand average of hydropathy-1.097
Instability index47.05
Isoelectric point6.41
Molecular weight99360.72
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27149
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.68|      37|      38|      56|      92|       1
---------------------------------------------------------------------------
   56-   92 (72.57/49.21)	WQEHTSADGRRYYYNKKTRLSSWEKPLELMTPIERAD
   97-  133 (71.11/48.06)	WKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     527.82|      64|      65|     370|     433|       2
---------------------------------------------------------------------------
  305-  365 (70.86/40.06)	..EAKNAFKALL.E...SANVESDWTWDQAMKAIINDKRYGAL....KTLGE...RKQ.....AFNEY.......LGQRKKI...EAEE
  370-  433 (101.70/61.17)	QKKAREEFTTMLEE...CKELTSSIKWSKAVDMFQDDERFKAV....ERSRD...RED.....LFENF.......IMELQKK...ERTK
  438-  500 (88.06/51.83)	QKRNRMEYRQFLES...CDFIKVNSQWRKVQDRLEDDERCSRL....EKI.D...RLE.....IFQEY.......IRDLERE...EEEQ
  512-  584 (69.26/38.97)	ERKNRDEFRKLMEEhvaAGTLTAKTHWRDYCMKVKDSSPYLAV....ASNTSgstPKD.....LFEDV.......AEELEKQyheDKAR
  585-  641 (50.29/25.99)	IKDA.....MKL......SKVTIASTW.....TFGD...FKAAilddVGSPN...ISDvnlklVFEEL.......LDRIKEK...EEKE
  646-  708 (83.72/48.86)	QRLA.DDFNDLLRS...KKEITASSNWEDCKPLFEESQEYRSI...gEESFG...RE......IFEEY.......IAHLQEK...AKEK
  714-  778 (63.92/35.32)	EEKAKKEKEREEKE...KRKE....KERKEKD..RDREREKGK....ERSRK...DET.....ESENVdvtgsygYKEDKKR...EKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.75|      28|      31|     178|     207|       3
---------------------------------------------------------------------------
  137-  154 (21.84/11.68)	...........SQETQSEMGTTS.....NEPAVV
  167-  200 (39.34/33.86)	VSVSSTTsstiSGMTSSPVPVTPVVAvvNPPPVV
  201-  232 (39.56/27.20)	VSGTSAIpiaqSAVTTSAVGVQPSMG..TPLPAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.63|      24|      25|     798|     821|       4
---------------------------------------------------------------------------
  779-  811 (32.76/15.15)	DRKHRKRHQSavddassdkEEKEESKKSRRHGS
  812-  837 (35.87/17.29)	DRKKSRKHAY.......tpESDTESRHKRHKRE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27149 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPEELKLAREQAEKSVSQETQSEMGTTSNEPAVVAVSLA
2) KAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDRDREREKGKERSRKDETESENVDVTGSYGYKEDKKREKDKDRKHRKRHQSAVDDASSDKEEKEESKKSRRHGSDRKKSRKHAYTPESDTESRHKRHKREHWDGSRRNGGYEELEDGELGEDGEIR
121
704
159
863










Molecular Recognition Features






MoRF SequenceStartStop




1) GGYEELEDGELGEDGEI
2) KHAYTPESDTESRHKRHKREHWDG
3) RHQSAVDDA
846
818
785
862
841
793