<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27146

Description Uncharacterized protein
SequenceMELLQPSHPPGPPGDRFSGFSPPASFLHGFDQGSPAVASSLSGIVEEGGDRVHVAVGKSVEKAESLLHWTFRRFGSCEICLVHVHQPSPLIPTLLGKLPASQANGEVVSAHRREEKKQTNKLLLNYSNICSRMKVKPSIITIEADHVQKGIVDLVNRHGIRKLVMGGTVPENCMKVKMSSSKANYAAKKAPEFCEIWFIHKGKHVWTKEAFKAPGFLPPISHPKTETGEDLGFQPECLPSGSSPVSVLSGGDRNGVESELVRTRVTSSPALSDSTSRNDPQFSPTSSSTFSGYGSSAEKRSMDSYSKTEEESLYYQLAEATIEAEASRNEAFLELLKRQKLESEAMEAIAKVKAFESAHAREVELRKDAEDALRSTIQEQDKLLEEREKLTREIQKTMRNVALLDSRAQEANRRCDEATEELKLIQASIATLQYEKQKIRRQKMEAMHWLDRWRSRGQAGTSHCNGFIGVFEDLPELAEFSLSDLETATCNFSESFKIGQGGNGSVYKGEMLDKTVAIKKLHPHNMQGQSEFQREVQVLGKIQHPHLVTLIGASPEAWSLVYEYLPNGSLQDRLFRKSNNSPLTWKVRARIITEISSALLFLHSCKPEKIVHGNLRPENILLGSDLRCKICDFGICRLVSDETLRCPSFRRNAEPKGAFPYEDPELYRTGVLTTKSDIYSFGVIILQLLTGRPPVGLASEVRKAVSCGKLASILDSSAGVWPTHVASRLADLALRCCELNSRDRPELKPTLVRELEQLHVSEEQPVPSFFLCPILQDIMHDPHVAADGFTYEKEALLGWLENGRETSPMTNLRLSHLHLTPNHSLRSTIQDWLCKS
Length836
PositionTail
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.06
Grand average of hydropathy-0.417
Instability index53.91
Isoelectric point6.99
Molecular weight93145.99
Publications
PubMed=17721507

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27146
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.17|      37|     211|       3|      41|       1
---------------------------------------------------------------------------
    3-   40 (71.05/46.74)	LLQP.SHPPGPPGDRFsGFSP........PASFLHGFDQG.............SPAVASS
  216-  274 (51.12/24.63)	FLPPiSHPKTETGEDL.GFQPeclpsgssPVSVLSGGDRNgveselvrtrvtsSPALSDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     292.80|     102|     451|      45|     174|       2
---------------------------------------------------------------------------
   45-  161 (130.09/122.74)	VEEGGDRvHVAVGKSVEKAESL..LHwTFRRFGSCEI.....CLVHVHQPSpLIpTLLGKLPASQAngeVVSAHRREEKKQtNKLLLNYSNICSRMKVKPSIITieadHVQKGIVdLVnrHGIR
  498-  606 (162.71/95.64)	IGQGGNG.SVYKGEMLDKTVAIkkLH.PHNMQGQSEFqrevqVLGKIQHPH.LV.TLIGASPEAWS...LVYEYLPNGSLQ.DRLFRKSNNSPLTWKVRARIIT....EISSALL.FL..HSCK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.05|      15|     449|     365|     379|       3
---------------------------------------------------------------------------
  365-  379 (23.71/18.30)	LRKDAEDALR......STIQE
  390-  410 (18.34/12.32)	LTREIQKTMRnvalldSRAQE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27146 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VESELVRTRVTSSPALSDSTSRNDPQFSPTSSSTFSGYGSSAEKRSMDSYS
256
306










Molecular Recognition Features






MoRF SequenceStartStop




NANANA