<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27130
Description |
Mediator of RNA polymerase II transcription subunit 13 (Fragment) |
Sequence | KELWIFWYGEEPDLSGLVSPELIACESEQGSWESGLSYECRSLLFKALHNLIERCLLSRDFVRLGKWFVQPYNGYEKHRCSSSHLSFSFAFFVHGESTVCASVDVRQHPAVRHLTKTCLQRTQTSQSGVKVILAPYGLAGTLTGQVSRMDSQLLEEWKHFYPISTGSNPETGLPPLVEVLVGGVRMRYPSCYVLVTDMDDTPPETPLSPPSSPVTCERPLLTQQELSAATELPERVWAECTLSSPVSASKTESSTEPGTWTFVEPTQKSSCTCSCSKYTTPGGWKSLASSQVQRERVDKGGRRVVPFHRRSTTQWDACPSVPANAPRSVLSRTEAPSTPPGGPPSYSRGPPTGGDCLPVPSVGSPSSPAPSPLLTPHSEPASVPPAEPTMPTLSPQPPPSHTNTALPLTPSQGPKSISSACNNQVHSPSVPGPVLKRPILVSREYEGALLEDEQPLSWLYDYSLQEAWLNHPVKRFKSMNISTPPTNRSNILYPPMNSQTLQSQAPKLEIKQEPVAVGECIGRRTDPYEFDATGEENGTNVDGLRRQRDDPTKPGSLFTSEGLQPSYKDLDQIFDNSDPDTSSDETNLNQLQIQTPPGSNKSGGLHEETRVDGANKNNNRGVTVLRPEELSKMFPTPPSLEHNPVASPCQLSDPLMDQTELLMPSRPLRHLPDIYPNMGSPQEEPIDDWSYVFKPAAISKMVGSSKYAPLTNLPSQSLPSITLPSHCVYRPSWQCNSASTNQADKPLPPTRPGSVQQQQQQQQQQQQQQQQQQQQQQQQPCPQSPAPPYRSNTLPGRPPPPPYDQPSPATSTTSSYLNKNLNSIEADTPGPARAPESNSLVVNILLGDTALNIFRDHNFDSCSLCVCNAGPKVVGNIKGADAGVYLSNSWVGSALFQDDDQIRCSCGFSAVVNRRLAHRAGLFYEDEMEITGVAEDPAEKKKGSLTAVACPGAKAAPEGLDTIPPNVLELLREQCLIVQSSASSLYRAARICATVKSYPTLTPTVNTLEFNDGNEVCVAALDQGKLDGAHNERAARVNGVHRWVFLRARGPQCSGDIVRMMRSLQPLLQDAVQKKCTTRMWEAPYTVTGPLTWRQFHRLAGRGTDDRCEPQPIPALVVGYDRDWLSLSPYAVCFWEKLSLEPFAGHRDVAYVVVAPDSDCIVNRVKSFFRELSCTYEICRLGRHTPISKQLRDGILRVGKSTVQKLAKQPMDDWFKFLGENHIGELLRLYAQVCNHRLAPYLTQVIQDRSLLDPGDSQQANKQQQQQSTTIPVPDTMPATPDVLSTKPESVEGENPRSETPSSSTATNQTTTNTTGNTTPTSQPTSNTPITTTTGPDEEEIEPPAIVVYFVEPFSLGGTEDPDRRRLAILALLRAYSSAINSMPENMRSNIHVQIISLESIMELGRARERRKIQDEMRALALNVFLQGRRLLNHNSTVKSLTGFGTAAAADIFLKSKDERNRAPYRLYAPAFVLAPLRAKSEAPESFGMPRPEECAVLYLSYCLSEDQSWLLAAATDDRGEIFETATINIDIPNRKRRKRASARRIGLQKLMDFILSVMSQGVQPWRLVVGRVGRIGHGELKGWSWLLSRKALLKASKHLKEICGQCSLLYPSAAPCVLSACLVSLEPDSTLRLMADQFTPDERFSQASVNCQLSTPQDVTCTHILVFPTSATTQSSQTAFQEQHNVPELGDDELFSALNDDMPEGMEGMGDFNDIFNVWPEPGAGGGQSPSGSPHRPEGSPHGGDGGGSGLGNHDGPGSPFPCSNTPRIATTEQAEEVGTLLQQPLALGYLVSTAPTGRMPSWFWAACPHLENVCPVFLKNALHLHSPAIQQNSDDLLQQQNAPTAHPLDSQYTTDVLRYVLEGYNALSWLALDANTKDRLSCLPVHVQALMHLYHATAALV |
Length | 1903 |
Position | Middle |
Organism | Acromyrmex echinatior (Panamanian leafcutter ant) (Acromyrmex octospinosus echinatior) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota>
Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea>
Formicidae> Myrmicinae> Acromyrmex.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.467 |
Instability index | 63.00 |
Isoelectric point | 5.82 |
Molecular weight | 208783.72 |
Publications | PubMed=21719571
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP27130
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 811.12| 195| 196| 378| 572| 1
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202- 353 (198.47/90.72) .................................PPETP........LS..PPSSPVTCERPLL.TQQELSAATELPERVWA..EcTLSSPVSASKTESSTE.PGtwTFVEPTQKSSctcSCSKYTTPGGW......KSLASSQVQRERVDKGGRRVVPFHrrSTTQWDACPSV................PANAPRSVL................SRT...........EAPSTPPGGpPSYSRG...PPTG
354- 553 (328.62/156.35) GDCLpVPSVGSPSSPAPSPL...ltphSEPASVPPAEP....TMPTLSPQPPPSHTNTALPLTPSQGPKSISSACNNQVHS..P.SVPGPVLKRPILVSREYEG..ALLEDEQPLS...WLYDYSLQEAWLNH.PVKRFKSMNISTPPTNRSNILYPPMN..SQTLQSQAPKLEIKQE...........PVAVGECIG................RRTDPYE..FDATGEENGTNVDG.LRRQRD...DPTK
554- 751 (225.99/104.59) PGSL.FTSEGLQPSYKDLDQ...ifdnSDP.DTSSDET....NLNQLQIQTPPG.SNKSGGL...HEETRVDGANKNN..............NRGVTVLRPEEL..SKMFPTPP.S..............LEHnPVA..SPCQLSDPLMDQTELLMPSRP..LRHLPDIYPNMGSPQEepiddwsyvfkPAAISKMVGsskyapltnlpsqslpSITLPSHcvYRPSWQCNSASTN.....QADkplPPTR
752- 835 (58.03/19.90) PGSV.QQQQQQQQQQQQQQQqqqqqqqQQPCPQSPAPPyrsnTLPG.RPPPPPYD.......QPSPATSTTSSYLNKNLNSieA.DTPGPA.RAP............................................................................................................................................................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 527.13| 163| 1709| 5| 180| 2
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5- 180 (260.14/181.24) IFWYGEEPDLSGLVSPELIACESEqGSWE......SGL.SYECRSLLFKALHNliERCLLSRDFVRLGKWFVQPYN.GYEKHRCSSSHL.SFSFAFFVHGEStVCasvDVRQHPAVrHLTKTCLQrtQTSQSGVKVILAP..YGLAGTLTGQVSRMdsqLLEEWKHFYPISTGSNPE...TGLPPLVEVL
1716- 1892 (266.99/152.89) IFNVWPEPGAGGGQSPSGSPHRPE.GSPHggdgggSGLgNHDGPGSPFPCSNT..PRIATTEQAEEVGTLLQQPLAlGYLVSTAPTGRMpSWFWAACPHLEN.VC...PVFLKNAL.HLHSPAIQ..QNSDDLLQQQNAPtaHPLDSQYTTDVLRY...VLEGYNALSWLALDANTKdrlSCLPVHVQAL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 64.12| 19| 37| 865| 885| 4
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865- 885 (32.14/30.35) CVCnaGPKVVGNIKGAD.AGVY
904- 923 (31.99/22.17) CSC..GFSAVVNRRLAHrAGLF
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