<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27124

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMMGDQFRSKVEQYSPKSSPRGARSPVVSRQDSTGTLKTTISLGKNPSIVHSGPFYLMKEPPGESELTGATNLMAYYGLEHSYSKFSGKKLKEQLSSFLPNLPGIIDRPGHQDNSSLRSVIEKPPIGGKELLPLTSVQLAGFRLHPGPLPEQYRYINQAPQRKHKNKHKKHKHKPGEVLSGQETATTDVGGSDTHEKKHKKQKRHDEEKEARKKRKKEKKRKKQKHSPEHTGSLTPSQHSNS
Length241
PositionHead
OrganismAcromyrmex echinatior (Panamanian leafcutter ant) (Acromyrmex octospinosus echinatior)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Acromyrmex.
Aromaticity0.05
Grand average of hydropathy-1.221
Instability index54.40
Isoelectric point10.04
Molecular weight27047.34
Publications
PubMed=21719571

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP27124
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.48|      14|      19|     194|     207|       1
---------------------------------------------------------------------------
  163-  176 (26.93/11.86)	HKNKHKKHKHKPGE
  194-  207 (27.70/12.38)	HEKKHKKQKRHDEE
  216-  228 (23.85/ 9.75)	KEKKRKKQK.HSPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.47|      16|      19|      87|     104|       2
---------------------------------------------------------------------------
   98-  119 (12.62/11.65)	LPNlPGIidrpGHQDnSSLRSV
  120-  136 (21.86/ 9.65)	IEK.PPI...gGKEL.LPLTSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27124 with Med19 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DQFRSKVEQYSPKSSPRGARSPVVSRQDSTGTLKTTISL
2) LPLTSVQLAGFRLHPGPLPEQYRYINQAPQRKHKNKHKKHKHKPGEVLSGQETATTDVGGSDTHEKKHKKQKRHDEEKEARKKRKKEKKRKKQKHSPEHTGSLTPSQHSNS
3) SFLPNLPGIIDRPGHQDNSSLRSVIEKPPIGGKE
4
131
96
42
241
129










Molecular Recognition Features






MoRF SequenceStartStop




1) EQYRYINQA
2) KKHKKQKRHDEEKEARKKRKKEKKRKKQKHSP
3) MMGDQFRSKVEQYSPK
150
196
1
158
227
16