<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27090

Description Mediator of RNA polymerase II transcription subunit 7
SequenceMETTETNSSFFPAPPTRYLQFTKPNLTIAKSIQSKTKPNELQFDSDLQKRLIKESLKDLKDIEEIDEEEIERINEIDLRTLLEPPNLDLIKERGGWSSFGDWEPWPGKSSRAMLEGMPKLYEEKMERKDALQALLNTLIYSYLKLLNQLGHQGPPSLSNHSNQVSNTDQIISHIELTSFNMHGLCNELRPRQARETLKLMMKEQAKEKREKARLVLKTCEDLKNDLIGLKNHSGSFDDPIQNIQSNETFDDSMKETDEKTLLKEKQQDWNALLSVVDDL
Length279
PositionMiddle
OrganismMelampsora larici-populina (strain 98AG31 / pathotype 3-4-7) (Poplar leaf rust fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Pucciniomycetes> Pucciniales> Melampsoraceae> Melampsora.
Aromaticity0.06
Grand average of hydropathy-0.813
Instability index51.21
Isoelectric point5.13
Molecular weight32259.16
Publications
PubMed=21536894

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27090
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.76|      31|      54|     192|     222|       1
---------------------------------------------------------------------------
  192-  222 (51.36/27.34)	QARETLKLMMKEQ.....AKEKREKARLVLKTCEDL
  244-  279 (47.40/24.81)	QSNETFDDSMKETdektlLKEKQQDWNALLSVVDDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.03|      40|      53|      53|      94|       2
---------------------------------------------------------------------------
   53-   94 (60.07/41.97)	KESLKDLKDIEEIDEEEIERINEidLRTLLEP...PNLDLIKERG
  108-  150 (60.96/36.62)	KSSRAMLEGMPKLYEEKMERKDA..LQALLNTliySYLKLLNQLG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27090 with Med7 domain of Kingdom Fungi
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