<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27082

Description Uncharacterized protein
SequenceMSTEISATGLVSIELRQSVLDRLATHSHSVCHFLAREVIFDRGPLDEFPADTQMLRLRHTLQTPDFSQPKETGTGWTLISLGRPEPERLSPEFLIRPIYTGPVLEGEPFERKFEYYRRGLVFTRGPVLTEIYQVHSTPTDPPIEWRDTYLISVTVIIPPANTTGRSIQELREEASERIRGIQGYLKGLVDLGRVEPF
Length197
PositionHead
OrganismMelampsora larici-populina (strain 98AG31 / pathotype 3-4-7) (Poplar leaf rust fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Pucciniomycetes> Pucciniales> Melampsoraceae> Melampsora.
Aromaticity0.09
Grand average of hydropathy-0.333
Instability index46.94
Isoelectric point5.60
Molecular weight22460.29
Publications
PubMed=21536894

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27082
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.92|      17|      25|      64|      84|       1
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   64-   84 (26.92/22.30)	PDF.SQPKETGTgwtlISLGRP
   91-  108 (29.00/13.72)	PEFlIRPIYTGP....VLEGEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.80|      13|      14|     130|     142|       2
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  130-  142 (25.14/14.44)	EIYQVHSTPTDPP
  147-  159 (22.65/12.42)	DTYLISVTVIIPP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27082 with Med18 domain of Kingdom Fungi
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