<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27078

Description Uncharacterized protein
SequenceMVSDKSSSSNTAATTTTSTMGKRNKLKSVQTITAPHRAGNGHNNNDDDNDDDGDDNDQVLTTAVIVDDSTTINGTRGGLGQDEDQQEEQEGIELDQDIEFYDASSNNNNNSIDSKNIKQDLEHNQTIFTELVTTTTIDCWRSREDPLEWSIKILPLLNEFEQYTIYDNHQNYILCEILIQQMHVGVSPSPLLVSYLRYAIATKMVFTTHLCDLLYQYAQPDRSKHFSAMLSVISDIVNLPSDSFNSLPPFIKKRNQSNNNNKQDEEEEEQEEEEEEKVELLKDDNNKRKRQNGRLQDDDDEDEEKEKENNNNDNDNNSHLLKKRKNQIGSHDNSVYEKELEQQDNDDGKEDIQMNDGDNQQHQQHNQKQQQQQQQKKKKNHHFSEFKEEEAVPKLMVILFKGLIYYFNNNNNNNNNNVGNIGIDMTTILGNGIVCSNLISAIVKNQAVSSAIYFCQHSSAQLYRELSDMFVAIEQNANRMVIPYGISNIFNLELVTNIKSLLFTPYLPHEEIKYLAYDNSQLPINQDQSIIFQLLLEELITGTRLSCTTQSNNNNNNTNNNIVQTEDTFYKLVCYRTLKNMTYTNFIFEIVRTLIQRLSLCMMDGATSAQFKKVKMVLLYRIPKLYESLIHYHNSSCGGVGSGDNIDTPIGSMEGALHLVLQICPELEGEVILPLIFILIRKNLVSSTVIKDKFPSLTSDIESLEYEIQQQQLNHPSAPSSPTTIDSLYSSSFQIRTLNDIKTIKFILKI
Length750
PositionTail
OrganismCavenderia fasciculata (strain SH3) (Slime mold) (Dictyostelium fasciculatum)
KingdomAmoebozoa
LineageEukaryota> Amoebozoa> Evosea> Eumycetozoa> Dictyostelia> Acytosteliales> Cavenderiaceae> Cavenderia.
Aromaticity0.07
Grand average of hydropathy-0.681
Instability index51.93
Isoelectric point4.80
Molecular weight85673.24
Publications
PubMed=21757610

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27078
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     171.39|      32|      32|     283|     314|       1
---------------------------------------------------------------------------
   54-  117 (25.72/ 8.20)	DDNDQVlttavivddsttingtrGGLGQDEDQQEEQEG.................ieldqdiefydaSSNNNNN......sidSK.NI
  253-  286 (33.59/12.96)	KRNQSN.................NN.NKQDEEEEEQEE.............................E......eeekvellkDD.NN
  287-  317 (50.79/23.35)	KRKRQN.................GRLQDDDDEDEEKEK.............................ENNNNDN...........dNN
  323-  359 (37.15/15.11)	KRKNQI.................G...SHDNSVYEKEL.............................EQQDNDD.gkediqmnDG.DN
  360-  414 (24.13/ 7.24)	QQHQQH.................N..QKQQQQQQQKKKknhhfsefkeeeavpklmvilfkgliyyfNNNNNNN..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     183.59|      67|     142|     415|     490|       2
---------------------------------------------------------------------------
  415-  461 (68.51/33.38)	.....................................................................................................NNNVGNIGIDMT..TILG.....NGIVC.........SNLISAIVKNQAVSSAIYFCQH...SSAQ
  462-  490 ( 2.42/11.89)	LYRelsdmfvaIEQNANRMvIPY........GISNIF..................................................................................................................................
  555-  610 (41.27/16.63)	.....................................nlelvtniksllftpylpheeikylaydnsqlpinqdqsiifqllleelitgtrlscttqsnnnNNNTNN.NIVQTedTFY.......KLVCyrtlknmtyTNFIFEIVR..TLIQRLSLCMMdgaTSAQ
  619-  689 (71.39/37.36)	LYR........IPKLYESL.IHYhnsscggvGSGDNI................................................................DTPIGSMEGALH..LVLQicpelEGEVI.........LPLIFILIRKNLVSSTV............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.32|      22|      34|     155|     180|       3
---------------------------------------------------------------------------
  155-  180 (36.70/39.36)	PLLNEFEQYTI.....YDNHqnyiLCEILIQ
  190-  216 (35.63/25.46)	PLLVSYLRYAIatkmvFTTH....LCDLLYQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.90|      20|      23|     695|     714|       4
---------------------------------------------------------------------------
  695-  714 (34.56/24.01)	PSLTSDIESL.EYEIQQQQLN
  719-  739 (30.34/20.12)	PSSPTTIDSLySSSFQIRTLN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27078 with Med24 domain of Kingdom Amoebozoa
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