<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27077
Description |
Mediator of RNA polymerase II transcription subunit 14 |
Sequence | MNDHNHQPSAAGGSGGSSSSPTAGLPIATPAATTNNTTTISLSVVIHRLVEQSYNNLMSLTERLPKESDIERKKQLVDYLDATREKFLKLLVLLKWSQHVSTLTKANEIIEMLNKEDNYFRDAADHLMMTKDAMINARAPIYDVPTAIDVLTTGSYQRMPTNIKRVLPPAPPLPAQIQSTIEKLNSILRYKLFTLDIPKEFDPIKVEDGKAHIKVENEYECFLSIDGGSDKSNWILLSFNLFIYSQKDREGEGPIKVAYDDKMKQVQDRIQARIVTSNQPLYELHNMLHYLVVSSQLSILCAQSENLKKTILKNSTRCIFGKDVKDQSITVFYWIPEELANTFDHKKPNIYIKIAIDPDTQKLIISHVPSLTHPNIPNYTFNVASLNLENILFSAIELHGYLRLQKLNVILYEERLKQQVKSFDDIKLIGSCGFENSSVVSSTDQKQMIDDESLAATLFIKLYGSNNHLDVSVNFQNGKYTLYHSTLKNRDLLLNLETRLNNDNMEIKSIVNFFRLKSLLSCIEEAAVFMEMECFYKIPIQNDILIQTLLESNGQYICIRFSNENEIFYLFVTIQNTSTTTNSSSVFTPSIFLFNNNNNNNSSQPTIFKMDSDEELTSLIQQQPSNTTEQNTKFQKQINNILYRLVESAKKKIKILQASLLLSKENIAHTIIPQPSSSSSLTESMQHETISFLYQPNNSVIQTNKMYLSFYGNDSDQSHQQYCTISFYDKSPLVFMNDQVDQSNTTQQQRHPASFVQNDHISHSLSGLWTFTYSTFSNNNWLNSFQNDIQSVNKMLSLSMQMIKQLNSTPKLSLIFHIDHIAPLELKLTCTNINTPNDLKHTIRIYVNQSKNYSIEYQPFVNPLVPFYERILNYNNTISTNTTITTITTTNNNNNTANTSPSNTTPTTSAPPTMATKINDQTPNSILNFLNSIAISNEMVYAVQSLIYPSTTTYFPPLETVIIPRNSTHIRLVYRNQHALDVRAVTTEHCIVEDAYFSTASLLSSQQSQTQKKLLSPIPSLHQVMEQRLGHPSMDNPLGQRTSWLVPLKTLKSTVHNILCFLNYHYLVKNFASLIKNHYKDAQYAPNQLKFVNENVSVIVQVREYIQVDMEATNTRPDSSPSKFELDTLSIFFKKNTQLSYRTQTIISLVNFFTLPIKVWIELCKIIRSGINEPEDNKPKYNMELLLNTSNLHPREALIHLKDRQILMLIVRFFSKQQEIYVDFPLLYDYQNATVRYWNKTMPTSINAEQQQQQQQPPTGESQNKKMMAINNLTDLVDFTNSLKSSQAPLYMFCQKLSYHIDHLFPTTTTTTTTSTTSIPVVTNPQSVTIPINNVSLPTQPTFNAPLTSVIT |
Length | 1352 |
Position | Tail |
Organism | Cavenderia fasciculata (strain SH3) (Slime mold) (Dictyostelium fasciculatum) |
Kingdom | Amoebozoa |
Lineage | Eukaryota> Amoebozoa> Evosea> Eumycetozoa> Dictyostelia> Acytosteliales>
Cavenderiaceae> Cavenderia.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.344 |
Instability index | 44.61 |
Isoelectric point | 6.84 |
Molecular weight | 154256.64 |
Publications | PubMed=21757610
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082
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GO - Cellular Component | mediator complex GO:0016592 IEA:UniProtKB-UniRule
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:UniProtKB-UniRule
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP27077
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 1088.33| 320| 367| 458| 823| 1
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442- 750 (377.17/287.81) ...........................................................STD........QKQMIDDESLAATLFIKL.Y......GSN.......NH.LDVS.VNFQNGKYTLYHSTLKNRdlLLNLETRLNNDNMEIKSIVNFFRL............KSLLSCIEEAAVFMEMEcfykipiqndILIQT...........LLESNGQYICIR.FSNENEI...FYLFVTIQNTSTTTNsssvftpsiflfNNNNNNNSSQPTIFKMDSDEElTSLIQQQPSNTTEQNTKFQKQINNILYRLVESAkKKIKI.......LQASLLLSK.....ENIAHTIIPQ..PSSSSSLTESmqHETISFLYQPNNSV....IQTNKM.....YLSFYG.NDSDQSHQQYctiSFYdkSPLVFMNDQVDqsnttqqQR
751- 1028 (353.38/214.21) HPAsfvQNDHISHSLSglWTFTYSTFSN..NNWLnSFQNDIQSVNKMLSLSMQMIKQLNSTP........KLSLIFHIDHIAPLELKL.T......CTNintpndlKHtIRIY.VN.QSKNYSIEYQPFVNP..LVPFYERILNYNNTIST........................................................................................NTTITTITTTNN............NNNTANTSPSNT..........TPTTSAPPTMATKINDQTPNSILNFL....NS....IAIsnemvyaVQ.SLIYPStttyfPPLETVIIPR..NST.........H..IRLVYRNQHALdvraVTTEHCivedaYFSTASlLSSQQSQTQK...KLL..SPIPSLHQVME.......QR
1031- 1337 (357.78/198.92) HPS...MDNPLGQRTS..WLVPLKTLKStvHNIL.CFLNYHYLVKNFASLIKNHYKDAQYAPnqlkfvneNVSVIVQVR.........eYiqvdmeATN.......TR.PDSSpSKFELDTLSIFFK..KN........TQLSYRTQTIISLVNFFTLpikvwielckiiRSGINEPEDNKPKYNME..........LLLNTsnlhprealihLKDRQILMLIVRfFSKQQEIyvdFPLLYDYQNATVRYW..................NKTMPTSINAEQQQQ.....QQQPPTGESQNKKMM.AINN.LTDLVDFT.NSLKS.......SQAPLYMFC.....QKLSYHI.DHlfPTTTTTTTTS..TTSIPVVTNPQSVT....IPINNV.....SL...........................................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 206.94| 69| 100| 207| 282| 2
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207- 282 (97.78/89.27) EDGKAHIkVENEYECFLSIDgGSDKS....NWILLSF.NLFiySQKDREGEgpIKVAYD.DKMKQVQDRIQArIVTSNQPLY
305- 379 (109.16/70.49) ENLKKTI.LKNSTRCIFGKD.VKDQSitvfYWIPEELaNTF..DHKKPNIY..IKIAIDpDTQKLIISHVPS.LTHPNIPNY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 130.46| 41| 221| 162| 205| 4
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162- 205 (62.09/57.34) NIKRVLPPAPPLPAQIQstIEKLNSILRYKLFTLDIpKEFDPIK
387- 427 (68.36/49.75) NLENILFSAIELHGYLR..LQKLNVILYEERLKQQV.KSFDDIK
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