<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27074

Description Putative mediator complex subunit 27
SequenceMSHQQGTQLNQQQLQFLYQQQQQQQQQQQNALRQQQLLQQQQQQQQQQQQQNGGQQQPQIPAGQQQYKQPASAAAQPVNNNINMTSPPNTNTNTNTIQPTSTMTTTNTNTNVSTPTSSTSTSSSSSSMTPQFPQPQITTYDKPILLQKEILELYDIILGQISSVRCGTDEIFQAIMSDVRGPSLRYPLSDQPTMHPQIDRDKKKIAIQQAMKCILRSLAIIDTLSQKVVKYTSPVTAQHSHIFEFTWSMNKCAYEPSILRTQSLLKSEYLWREESARKSLTAIQLLEKKVPKLKEMINSASQQSFTSTSSSSSSSSSSAIVPTSVTSPISRKRKDYQNDQVSPTTAAATTSPKKSILDSYSSLESIIQSIRQEAPLEIVKIQSNTQMKGLFVILSDVLKCLISFNMAEESRDHFRIDKISFFGINESFDSFWGSSKYNIFKKLSENAYEAISYFTSNHNNQSILKNILSWIWSFRGLFVEECRGCQCILQLDSSNYMFLPPSFRTFDNYIPYHPVCYYTAHPPTPSTALSSSTTSTPPLTL
Length541
PositionTail
OrganismCavenderia fasciculata (strain SH3) (Slime mold) (Dictyostelium fasciculatum)
KingdomAmoebozoa
LineageEukaryota> Amoebozoa> Evosea> Eumycetozoa> Dictyostelia> Acytosteliales> Cavenderiaceae> Cavenderia.
Aromaticity0.08
Grand average of hydropathy-0.570
Instability index66.34
Isoelectric point8.91
Molecular weight61031.92
Publications
PubMed=21757610

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27074
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.19|      20|      20|      11|      30|       1
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    3-   25 (35.69/14.37)	HQQGTqlnQQQLQFLYQQQQQQQ
   26-   46 (32.00/12.17)	QQQQNalrQQQL..LQQQQQQQQ
   47-   69 (34.49/13.66)	QQQQQnggQQQPQIPAGQQQYKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.02|      12|      15|      90|     101|       2
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   90-  101 (24.23/15.84)	TNTNTNTIQPTS
  106-  117 (23.79/15.41)	TNTNTNVSTPTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.72|      52|      70|     357|     411|       3
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  357-  411 (81.51/54.75)	LDSY..SSLESIIQSIRQEAPLEIVKIQSNTQMKGlfvILSDVLKCLISFN..MAEESR
  428-  483 (84.21/49.50)	FDSFwgSSKYNIFKKLSENAYEAISYFTSNHNNQS...ILKNILSWIWSFRglFVEECR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.07|      13|     189|     118|     130|       4
---------------------------------------------------------------------------
  118-  130 (24.17/ 9.69)	STSTSSSSSSMTP
  310-  322 (22.90/ 8.85)	SSSSSSSSSAIVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.50|      31|      59|     216|     246|       5
---------------------------------------------------------------------------
  216-  246 (51.41/31.90)	RSLAIIDTLSQKVVKYTSPVTAQHSHIFEFT
  278-  308 (49.09/30.14)	KSLTAIQLLEKKVPKLKEMINSASQQSFTST
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27074 with Med27 domain of Kingdom Amoebozoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA