<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27074

Description Putative mediator complex subunit 27
SequenceMSHQQGTQLNQQQLQFLYQQQQQQQQQQQNALRQQQLLQQQQQQQQQQQQQNGGQQQPQIPAGQQQYKQPASAAAQPVNNNINMTSPPNTNTNTNTIQPTSTMTTTNTNTNVSTPTSSTSTSSSSSSMTPQFPQPQITTYDKPILLQKEILELYDIILGQISSVRCGTDEIFQAIMSDVRGPSLRYPLSDQPTMHPQIDRDKKKIAIQQAMKCILRSLAIIDTLSQKVVKYTSPVTAQHSHIFEFTWSMNKCAYEPSILRTQSLLKSEYLWREESARKSLTAIQLLEKKVPKLKEMINSASQQSFTSTSSSSSSSSSSAIVPTSVTSPISRKRKDYQNDQVSPTTAAATTSPKKSILDSYSSLESIIQSIRQEAPLEIVKIQSNTQMKGLFVILSDVLKCLISFNMAEESRDHFRIDKISFFGINESFDSFWGSSKYNIFKKLSENAYEAISYFTSNHNNQSILKNILSWIWSFRGLFVEECRGCQCILQLDSSNYMFLPPSFRTFDNYIPYHPVCYYTAHPPTPSTALSSSTTSTPPLTL
Length541
PositionTail
OrganismCavenderia fasciculata (strain SH3) (Slime mold) (Dictyostelium fasciculatum)
KingdomAmoebozoa
LineageEukaryota> Amoebozoa> Evosea> Eumycetozoa> Dictyostelia> Acytosteliales> Cavenderiaceae> Cavenderia.
Aromaticity0.08
Grand average of hydropathy-0.570
Instability index66.34
Isoelectric point8.91
Molecular weight61031.92
Publications
PubMed=21757610

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27074
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.19|      20|      20|      11|      30|       1
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    3-   25 (35.69/14.37)	HQQGTqlnQQQLQFLYQQQQQQQ
   26-   46 (32.00/12.17)	QQQQNalrQQQL..LQQQQQQQQ
   47-   69 (34.49/13.66)	QQQQQnggQQQPQIPAGQQQYKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.02|      12|      15|      90|     101|       2
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   90-  101 (24.23/15.84)	TNTNTNTIQPTS
  106-  117 (23.79/15.41)	TNTNTNVSTPTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.72|      52|      70|     357|     411|       3
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  357-  411 (81.51/54.75)	LDSY..SSLESIIQSIRQEAPLEIVKIQSNTQMKGlfvILSDVLKCLISFN..MAEESR
  428-  483 (84.21/49.50)	FDSFwgSSKYNIFKKLSENAYEAISYFTSNHNNQS...ILKNILSWIWSFRglFVEECR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.07|      13|     189|     118|     130|       4
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  118-  130 (24.17/ 9.69)	STSTSSSSSSMTP
  310-  322 (22.90/ 8.85)	SSSSSSSSSAIVP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.50|      31|      59|     216|     246|       5
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  216-  246 (51.41/31.90)	RSLAIIDTLSQKVVKYTSPVTAQHSHIFEFT
  278-  308 (49.09/30.14)	KSLTAIQLLEKKVPKLKEMINSASQQSFTST
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27074 with Med27 domain of Kingdom Amoebozoa
Unable to open file!