<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27072

Description Uncharacterized protein
SequenceMTVEKESSPLVEEAAKLALSEPFAKQHTRLVSPIPKPETDLDMDLSLDGLGNMGELTDLALGDGVTDEDFDFFETKRPISTPKSAVSVKTPSWTLAASSSTSVTTLPVISSASTPGAGSSFLASALQPVQDLINPLRSHTDTSAVAPSPVAPSPGASFHPHTFSPYGNFTTPQYNPMSPAFIATNGASCNTTGLATVGGLSTSPGKLRFDGGVSPAESPAMVFGSPQFMHGDAATPHFAQSSPFNTAGSHIPASPAVGPLVTTSSMVQTPSLTTDRVISRLNEQHDDPSMTVDSSQFTIGNEVSVCDAFVVESEPMKVYQSLHPNQTVKSPVSDDSFETEILQMTMPEAWLPFRIRFDLNVRNLVQRTLAEHENTFSKSPQLLKLMASDKMLTKTDLFKNTASLFTAPHLGWLIGNFSDATAFMPFDTCLELSDCEIMWHQESKLGRLDEFCVPDISHLNALCFDCGEHRDHSSKCECCTDFQNIPTGTLIGPLPWSLPATACSNKLFDTIRMTLVSLLGMNSGDDSTTLNISGPLALLEYHNLQDLSTTKYGGFQVRKKKRIMEPVVDILAAPDIIFRHDGALISANPFSYRFWTKLRLEPYAGRKRIAYFGVCGVSDKMTTDTMDIEKSSVVETISIQMKQTACMWMTEFQNEWDVHRFGDCKPLMESVELSTCSVNIPGQFEIRVTLPYVVHHWLLTRFCNLVDNFDVCDGASVTKLFSKAFTKSTCFVSKLCSISVDIIRSRIVFKPVVFHQDRLYSALVTSNDCHDVYNQCQWVLPAPVSLRNANSSRPISMDHSNVPCAIPAPSVILDDKREGRQAFLSIRGQDHGTIDSDSDGECTSYDEFFDDARRAASERLIVEPVRVAHVVYWIYKTELERVQIFVRWTDHRGELSGAGIVSSRQLESRSALFGRMIENLQFETRYQPNSQIGDSSDVPIELDLDSESSRSCMQKPAVSCIVSISVFCISTCSALQCSRPCGSAPFGPLNKQGDGVWCEDSVPCAIFTLSHHRVPLPVISFGQQNLVPFLPLSSGWILKGSQSMRLSLLWHSLTESAALIAPSRLRHILVDEWDQEPASSPVGSSSTGYLAALPNHCNIVRDVLKQLCSLDHLYKLVSDE
Length1120
PositionKinase
OrganismBatrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) (Frog chytrid fungus)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Chytridiomycetes> Rhizophydiales> Rhizophydiales incertae sedis> Batrachochytrium.
Aromaticity0.08
Grand average of hydropathy-0.127
Instability index53.00
Isoelectric point5.33
Molecular weight123042.23
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27072
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.01|      39|     168|     476|     515|       1
---------------------------------------------------------------------------
  476-  515 (73.04/47.10)	CECCTDFQNIPTGTLIG...PLPWSLPATACSNKL...FDtIRMTL
  646-  690 (65.97/38.06)	CMWMTEFQNEWDVHRFGdckPLMESVELSTCSVNIpgqFE.IRVTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     275.65|      68|      69|      87|     154|       2
---------------------------------------------------------------------------
   78-  148 (98.84/45.44)	PIStPKSavSVK...............TPSWTLAASSSTSVTTLPVISSASTPGAGSSFLASALQPVQD.L.INPL.RSHTDTSAVAPS
  149-  215 (98.60/45.31)	PVA.PSPgaSFH................PH.TFSPYGNFTTPQYNPMSPAFIATNGASCNTTGLATVGG.LsTSPG.KLRFD.GGVSP.
  216-  294 (78.21/34.55)	..A.ESP.....amvfgspqfmhgdaaTPHFAQSSPFNTAGSHIPA.SPAVGPLVTTSSMVQTPSLTTDrV.ISRLnEQHDDPSMTVDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     371.10|     117|     223|     700|     824|       3
---------------------------------------------------------------------------
  700-  824 (186.34/136.13)	TRFcnlVDNFDVCDGASV.TKLFSKAFTKSTCF....VSKLCSISVDIIRSRIVFKPVVFHQDRLYSALVTSNDchDVYnqCQWVLPAPV.SLRNANSSRP.ISMDHSN.VPCaIPAPS.VILDDKREGRQAFL
  924- 1049 (184.77/111.37)	TRY...QPNSQIGDSSDVpIELDLDSESSRSCMqkpaVSCIVSISVFCISTCSALQCSRPCGSAPFGPLNKQGD..GVW..CEDSVPCAIfTLSHHRVPLPvISFGQQNlVPF.LPLSSgWILKGSQSMRLSLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.91|      25|     168|     404|     432|       5
---------------------------------------------------------------------------
  404-  432 (44.17/39.27)	LFTAP.....HLGWLIgnfsDATAF.MPFDTCLEL
  570-  600 (37.75/22.81)	ILAAPdiifrHDGALI....SANPFsYRFWTKLRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.92|      14|      46|     318|     331|       7
---------------------------------------------------------------------------
  318-  331 (26.78/15.89)	VYQSL..HPNQTVKSP
  365-  380 (21.14/11.10)	VQRTLaeHENTFSKSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27072 with Med13 domain of Kingdom Fungi
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