<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27069

Description Uncharacterized protein
SequenceMYEAFKRAKDSRRRGLTDKYTIDGFISAGTYGRVFKARKSMQNGKDKSVPRVGHAGHGDYSTLNGAAQEFAIKKFKPDKEGESALSSGISQSACREIALCKELHHENVVNLEEVMLDPKDRSISMIFEYAEHDLLQILHFHSHHERKVIPEYTIKSFLWQLLNGLAYLHANWVLHRDLKPANILVTSQGIIKIADLGLARIFQSPVQPLFHGDKVVVTIWYRAPELLLGSRHYTKSIDIWAVGCIFAELLMLRPIFKGEEAKMDNKKNIPFQKDQLIKIFDILGMPTVEKWPALVYMPEYGNLRDIQRSTTPNLRPTYFQGSSQRSELGFQLLQSTLEYDPEKRTSADDALSHAYFLDDPKPGAKQV
Length367
PositionKinase
OrganismBatrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) (Frog chytrid fungus)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Chytridiomycetes> Rhizophydiales> Rhizophydiales incertae sedis> Batrachochytrium.
Aromaticity0.10
Grand average of hydropathy-0.386
Instability index41.31
Isoelectric point8.84
Molecular weight41847.55
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IBA:GO_Central
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IBA:GO_Central

GO - Biological Process
protein phosphorylation	GO:0006468	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27069
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.35|      23|      38|      15|      39|       1
---------------------------------------------------------------------------
   15-   39 (35.88/32.54)	GLTDKYTIDGfiSAGTYG.RVFKARK
   56-   79 (37.48/26.16)	GHGDYSTLNG..AAQEFAiKKFKPDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.89|      27|     129|     188|     214|       2
---------------------------------------------------------------------------
  188-  214 (45.41/29.15)	QGIIKIADL.GLARIFQS..PVQPLFHGDK
  231-  260 (33.48/19.74)	RHYTKSIDIwAVGCIFAEllMLRPIFKGEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.88|      13|      21|     126|     138|       4
---------------------------------------------------------------------------
  126-  138 (23.18/13.46)	IFEYAEHDLL.QIL
  149-  162 (18.70/ 9.75)	IPEYTIKSFLwQLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27069 with CDK8 domain of Kingdom Fungi
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