<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27068

Description Uncharacterized protein
SequenceMTENPANLTIPIQPESSTLQLPHRQPTLQLTRMSHFCKTFLYKELERSLDLGFAAVWARQDLSRISLQEFLDDVIVDLSDCKLWVFSWNIQNPVSSYIPVSTLIRGILICLPGLDKFIEFLTRSNSRGICVFRLFIYLVYGKLVIQPVQSILRLEPLNPEWLKKHSSISKKIKVFIAPHGISAQLIPSDTLSKVGELEAIYDALDVLGGDTDTPPAIQSTDLTTTASGYSGSSLNMLGLTMTVEKESSSLVEEAAKLALSEPFAKQHTRLVSPIPKPETDLDMDLSLDGLGNMGELTDLALGDGVTDEDFDFFETKRPISTPKSAVSVKTPSWTLAASSSTSVTTLPVISSASTPGAGSSFLASALQPVQDLINPLRSHTDTSAVAPSPVAPSPGASFHPHTFSPYGNFTTPQYNPMSPAFIATNGASCNTTGLATVGGLSTSPGKLRFDGGVSPAESPAMVFGSPQFMHGDAATPHFAQSSPFNTAGSHIPASPAVGPLVTTSSMVQTPSLTTERVISRLNEQHDDPSMTVDSSQFTIGNEVSVCDAFVVESEPMKVYQSLHPNQTVKSPVSDDSFETEILQMTMPEAWLPFRIRFDLVFGAKINHNQLASFSKLNDLKSIKLEDGSIQAAEQICARYGSKYAKWCYRPTARRATKKIKKRAVLPGTIKQLYDMNVTKNVRNLVQRTLAEHENTFSKSPQLLKLMASDKMLTKTDLFKNTASLFTAPHLGWLIGNFSDATAFMPFDTCLELSDCEIMWHQESKLGRLDEFCVPDISHLNALCFDCGEHRDHSSKCECCTDFQNIPTGTLIGPLPWSLPATACSNKLFDTIRMTLVSLLGMNSGDDSTTLNISGPLALLEYHNLQEIDLSTTKYGGFQVRKKKRIMEPVVDILAAPDIIFRHDGALISANPFSYRFWTKLRLEPYAGRKRIAYFGVCGVSDKMTTDTMDIEKSSVVETISIQMKQTACMWMTEFQNEWDVHRFGDCKPLMESVELSTCSVNIPDNFDVCDGASVTKLFSKAFTKSICKRARDFIVDITSPYTVSKVYDGSYQSPNTLSKYCSHLCIFIFIPPYMLYHAQRKWPAKSGHISYFVQLSLQLCDYLACFVSKLCSISVDIIRSRIVFKPVVFHQDRLYSALVTSNDCHDVYNQCQWVLPAPVSLRNANSSRPISMDHSNVPCAIPAPSVILDDKREGRQAFLSIRGQDHGTIDSDSDGECTSYDEFFDDARRAASERLIVEPVRVAHVVYWIYKTELERVQIFVRWTDHRGELSGAGIVSSRQLESRSALFGRMIENLQCKFGQRGFAYRLAVFKIGSMDRLEMQDWILAMQHFCGSSIQESTNPLKDTGIDTTQTPLNKNVVETRYQPNSQIGDSSDVPIELDLDSESSRSCMQKPAVSCIVSISVFCISTCSALQCSRPCGSAPFGPLNKQGDGVWCEDSVPCAIFTLSHHRVPLPVISFGQQNLVPFLPLSSGWILKGSQSMRLSLLWHSLTESAALIAPSRLRHILVDEWDQEPASSPVGSSSTGYLAALPNHCNIVRDVLKQLCSLDHLYKLVSDE
Length1558
PositionKinase
OrganismBatrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) (Frog chytrid fungus)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Chytridiomycetes> Rhizophydiales> Rhizophydiales incertae sedis> Batrachochytrium.
Aromaticity0.08
Grand average of hydropathy-0.121
Instability index48.85
Isoelectric point5.96
Molecular weight172266.74
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27068
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     399.31|     128|     147|     796|     935|       1
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  796-  935 (205.62/159.89)	C....ECCTDFQNIPTGTLIGPLPWSLPATAC......SNKlFDTIRMTLVSLLgMNSGDDST.TLNIsgPlalleyHNLQEID.LSTTKY..GGFQVRKKKRIMEPVVDIlAAPDIIFR.HDGALISANPFSyRFWTKL....RLEPY....AGRKRIAYFG
  937- 1087 (193.69/118.84)	CgvsdKMTTDTMDIEKSSVVETISIQMKQTACmwmtefQNE.WDVHRFGDCKPL.MESVELSTcSVNI..P......DNFDVCDgASVTKLfsKAFTKSICKRARDFIVDI.TSPYTVSKvYDGSYQSPNTLS.KYCSHLcifiFIPPYmlyhAQRKWPAKSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     391.05|     126|     147|     289|     434|       2
---------------------------------------------------------------------------
  289-  434 (193.45/126.49)	GlgnmgeltDLALGDGVTDEDFDFFETKRPIStPKSAVSVKTPSWTlaasSSTSVTTLPVIS....SASTPGA...GSSFLASALQPVQDLI....NPLRSHtdtSAVAPSPVAPSP..GASFHPHTFspygNFTTPQ.YNPMSPAFIATNGASCNTTGL
  471-  610 (197.60/95.68)	G........DAATPHFAQSSPFNTAGSHIPAS.PAVGPLVTTSSMV....QTPSLTTERVISrlneQHDDPSMtvdSSQFTIGNEVSVCDAFvvesEPMKVY...QSLHPNQTVKSPvsDDSFETEIL....QMTMPEaWLPFRIRFDLVFGAKINHNQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.90|      48|     673|      32|      84|       3
---------------------------------------------------------------------------
   32-   84 (72.59/56.63)	RMshFCKTFLYKELErSLDLGFAAVWARQDLSRISlqEFLD.DVIVDLSDCK.LW
  710-  759 (81.31/46.92)	KM..LTKTDLFKNTA.SLFTAPHLGWLIGNFSDAT..AFMPfDTCLELSDCEiMW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.30|      42|    1161|     110|     153|       4
---------------------------------------------------------------------------
  110-  153 (65.70/52.00)	ClPGLDKFIEFLTRSNSRGICV..FRL..FIYLVYgKLVIQPVQSILR
 1217- 1262 (63.60/40.90)	C.TSYDEFFDDARRAASERLIVepVRVahVVYWIY.KTELERVQIFVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.36|      11|      15|     222|     232|       6
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  222-  232 (19.10/12.71)	LTTTASGYSGS
  239-  249 (18.26/11.79)	LTMTVEKESSS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.59|      19|     174|     446|     465|      10
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  446-  465 (30.35/21.15)	KLRfDGGVSPAESPAMVFGS
  623-  641 (34.24/18.99)	KLE.DGSIQAAEQICARYGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27068 with Med13 domain of Kingdom Fungi
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