<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27066

Description Uncharacterized protein
SequenceMNNINQALAASLLHQQQQQQQQQQQQQQLLMGPLWRTAFSEQQRHDVINRLTDLVRQGIPPNAQNEERIRNLAASFESGIYDRAESRDNYVALLQQKMMAISKRLTISREQNAGAASNTSPSTQASSTPQKTTQAQQQLPVNQIGNPLDLTQTFSNPAMMAQFLAQQPQLQQQITATMIQQEHFRQQQLLNNTQLTGLTAAQNNQLLQRNMTNQANANTTTNQQIRNAINFMQQQQQQQQQQQQQNQHIMGLASTNTSPLVTASTLPGNTQFRPTGTSSIINSNTSARVNQQQQGEKQTAAIIQQAKMQQMQSTAPSTPSILSSLGLQQQMHMQQSGINISPLMTSTNHPVTSMPSRSQDSPVSLGNHLTAGLRLNPLALNDMQKQYVNKRVQYNFALLQLISPIFHNIDHYVNVMQQHGNGEKEMEKITKLLTMATPVACDTTMTHLEKYKSYCEVLEKGGQTGSLGQFPNTTEAGHIGTPGSINSSQAQYDTQSPKQRSLFLYTTSGDGLATSGPASAQPTPTSVTTTAGAKKKLADSPNSTVHSRNHAPSTPNASLLSTRKSIRASGTSNVSTKDTLDSVKTPDVLAQLMIEREFGLPTSTSCTAYGFGDAMMQFESDEGVGDLCDFDIVGDDDELIDEATLLFGNEYCTVVSPEKSTELTIGGDLKEGADARTWTLLEQLTQIKTTMTMITVQKFDLLPPNGPILIVFSWEGGRRVGVRIGSEAMFNRQECNVNGLPFQVEMLCGVDLKKLDDSLANLAQTLKRPVGIVDMLRIAIAL
Length782
PositionTail
OrganismBatrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) (Frog chytrid fungus)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Chytridiomycetes> Rhizophydiales> Rhizophydiales incertae sedis> Batrachochytrium.
Aromaticity0.04
Grand average of hydropathy-0.519
Instability index49.84
Isoelectric point6.41
Molecular weight85888.55
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP27066
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     272.05|      39|     113|       3|      41|       1
---------------------------------------------------------------------------
    3-   34 (49.96/19.48)	.....................................NINQALA.....AS...........LLHQQQQ....QQQQ......QQQ..Q.....QQLLMG.......PL
   35-  102 (30.39/ 8.97)	WRT.AFSEqqrhdvinrltdlvrqgippnaqneerirNLAASFE.....SG...........IYDRAES....RDNY......VAL..L.....QQKMMA.......IS
  103-  148 (38.32/13.23)	KR......................ltisreqnagaasNTSPSTQ.....AS...........STPQKTT....QAQQ......QLP..V.....NQ.IGN.......PL
  149-  193 (39.67/13.95)	DLTqTFS................................NPAMM.....AQ...........FLAQQPQ....LQQQitatmiQQEhfR.....QQQLLN.......NT
  194-  260 (43.24/15.87)	QLT.GLTA...................aqnnqllqrnMTNQANA.....NTttnqqirnainFMQQQQQ....QQQQ......QQQ..Q.....NQHIMGlastntsPL
  268-  311 (26.48/ 6.87)	GNT.QF......................................rptgtSS...........IINSNTSarvnQQQQ......GEK..QtaaiiQQAKMQ.......QM
  312-  343 (43.99/16.27)	QST.APST.........................................PS...........ILSSLGL....QQQM......HMQ..Q.....SGINIS.......PL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.75|      34|     202|     346|     398|       2
---------------------------------------------------------------------------
  352-  390 (49.95/39.05)	TSMPSRSQDSPVSLGNhlTAGLRLNplaLNDMQKQYVNK
  514-  547 (57.79/23.16)	TSGPASAQPTPTSVTT..TAGAKKK...LADSPNSTVHS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27066 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GLATSGPASAQPTPTSVTTTAGAKKKLADSPNSTVHSRNHAPSTPNASLLSTRKSIRA
2) NRLTDLVRQGIPPNAQNEERIRNLAASFES
3) RLTISREQNAGAASNTSPSTQASSTPQKTTQAQQQLPVNQIGNPLDLTQT
4) RQQQLLNNTQLTGLTAAQNNQLLQRNMTNQANANTTTNQQIRNAINFMQQQQQQQQQQQQQNQHIMGLASTNTSPLVTASTLPGNTQFRPTGTSSIINSNTSARVNQQQQGEKQTAAIIQQAKMQQMQSTAPSTPSILSSLGLQ
5) SGINISPLMTSTNHPVTSMPSRSQDSPVSLGNH
6) TGSLGQFPNTTEAGHIGTPGSINSSQAQYD
511
49
104
185
336
464
568
78
153
328
368
493










Molecular Recognition Features






MoRF SequenceStartStop




NANANA