<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27056

Description U-box domain-containing protein kinase family protein
SequenceMVVMTNKFFELIGGAPSYSSVSVAVKGSVGDAVGGTASRRALRWTIENFLPKIDRLVLVHVMPTVTTIPSPSGSKIPIEELDESVVSMYKRDLRKEFEQVFVPFKRICKSNKVETLLLEHHDPAKALLKYMSDTDVECLVIGSCSSNFLTRKKGQEMPLTVLGEAPETCEIYVVCKDRILTKSTNQFTADSSSSFRIPEGAEAYTESFSRTRSDKTGLSASSITSSGRMRIGRPGSLPHSHPTSRVYSDAQSSSTDIVLVDDEHCRSILRHSTVSTSKIQMDPRPHLKTPKSGVRAEVEQLRKEVQTTLSMYKQACEELVHKQTQVQSLSSECIKETERVITALEKEEMRRKAAAEEKEKHLKAVKEVEEAKSMLAKEFCERQLAELDALKQSIEKQKVIEQLFLRDGRYRKYTKEEIAAATDNFSSRKIIGEGGYGKVYKCSLDHTPVALKVLKPDSVEKKEEFLKEISVLSQLRHPHVVLLLGACPENGCLVYEYMENGSLDCHISPKKGKPSLSWFIRFRIIYETACGLAFLHNSKPEPIVHRDLKPGNILLDRNFVSKIGDVGLAKLMSDEAPDSVTVYRNSIIAGTLYYMDPEYQRTGTIRPKSDLYAFGIIILQLLTARHPNGLLFCVEDAVKRGCFEDMLDGSVKDWPIAEAKELARIAIRCSQLKCRDRPDLSTQVLPALKRILESANSRLKTEQANARAPTHYYCPILKEIMEDPQIAADGFTYERKAIKEWIQKHQDVSPVTKHRLKHSDLTPNHTLRSAIREWRSRSRLDLSTTLGSY
Length789
PositionTail
OrganismArabidopsis thaliana (Mouse-ear cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.06
Grand average of hydropathy-0.401
Instability index48.24
Isoelectric point8.78
Molecular weight88874.14
Publications
PubMed=11130714
PubMed=27862469

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27056
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.11|      15|      31|     735|     749|       1
---------------------------------------------------------------------------
  735-  749 (28.09/17.01)	RKAIKEWIQKHQ.DVS
  768-  783 (23.02/12.81)	RSAIREWRSRSRlDLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.54|      24|      30|     667|     693|       2
---------------------------------------------------------------------------
  667-  693 (33.04/28.81)	IRCSQLKCRdRPdlSTQVLPALKRILE
  699-  722 (43.50/25.63)	LKTEQANAR.AP..THYYCPILKEIME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.15|      21|      30|     334|     354|       3
---------------------------------------------------------------------------
  334-  354 (33.14/23.89)	IKETERVITALEKEEMRRKAA
  365-  385 (32.01/22.81)	VKEVEEAKSMLAKEFCERQLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.55|      15|      30|     237|     251|       4
---------------------------------------------------------------------------
  237-  251 (28.59/19.14)	LPHSH.PTSRVYSDAQ
  269-  284 (22.97/13.93)	LRHSTvSTSKIQMDPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.48|      31|     147|     454|     511|       5
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  476-  511 (54.62/68.17)	RHPHVVLLlgaCPEN....GClvYEYMENGSL.DCHISPKK
  625-  660 (52.86/20.59)	RHPNGLLF...CVEDavkrGC..FEDMLDGSVkDWPIAEAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.77|      32|      33|     166|     197|       6
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  166-  197 (55.95/37.33)	PETCEIYVVCKDRILTKST..NQFTADSSSSFRI
  198-  231 (48.82/31.66)	PEGAEAYTESFSRTRSDKTglSASSITSSGRMRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.85|      17|      35|     531|     547|       7
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  531-  547 (31.73/21.75)	GLA.FLHNSKPEPI.VHRD
  567-  585 (21.11/11.99)	GLAkLMSDEAPDSVtVYRN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27056 with Med32 domain of Kingdom Viridiplantae
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