<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27056

Description U-box domain-containing protein kinase family protein
SequenceMVVMTNKFFELIGGAPSYSSVSVAVKGSVGDAVGGTASRRALRWTIENFLPKIDRLVLVHVMPTVTTIPSPSGSKIPIEELDESVVSMYKRDLRKEFEQVFVPFKRICKSNKVETLLLEHHDPAKALLKYMSDTDVECLVIGSCSSNFLTRKKGQEMPLTVLGEAPETCEIYVVCKDRILTKSTNQFTADSSSSFRIPEGAEAYTESFSRTRSDKTGLSASSITSSGRMRIGRPGSLPHSHPTSRVYSDAQSSSTDIVLVDDEHCRSILRHSTVSTSKIQMDPRPHLKTPKSGVRAEVEQLRKEVQTTLSMYKQACEELVHKQTQVQSLSSECIKETERVITALEKEEMRRKAAAEEKEKHLKAVKEVEEAKSMLAKEFCERQLAELDALKQSIEKQKVIEQLFLRDGRYRKYTKEEIAAATDNFSSRKIIGEGGYGKVYKCSLDHTPVALKVLKPDSVEKKEEFLKEISVLSQLRHPHVVLLLGACPENGCLVYEYMENGSLDCHISPKKGKPSLSWFIRFRIIYETACGLAFLHNSKPEPIVHRDLKPGNILLDRNFVSKIGDVGLAKLMSDEAPDSVTVYRNSIIAGTLYYMDPEYQRTGTIRPKSDLYAFGIIILQLLTARHPNGLLFCVEDAVKRGCFEDMLDGSVKDWPIAEAKELARIAIRCSQLKCRDRPDLSTQVLPALKRILESANSRLKTEQANARAPTHYYCPILKEIMEDPQIAADGFTYERKAIKEWIQKHQDVSPVTKHRLKHSDLTPNHTLRSAIREWRSRSRLDLSTTLGSY
Length789
PositionTail
OrganismArabidopsis thaliana (Mouse-ear cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.06
Grand average of hydropathy-0.401
Instability index48.24
Isoelectric point8.78
Molecular weight88874.14
Publications
PubMed=11130714
PubMed=27862469

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27056
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.11|      15|      31|     735|     749|       1
---------------------------------------------------------------------------
  735-  749 (28.09/17.01)	RKAIKEWIQKHQ.DVS
  768-  783 (23.02/12.81)	RSAIREWRSRSRlDLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.54|      24|      30|     667|     693|       2
---------------------------------------------------------------------------
  667-  693 (33.04/28.81)	IRCSQLKCRdRPdlSTQVLPALKRILE
  699-  722 (43.50/25.63)	LKTEQANAR.AP..THYYCPILKEIME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.15|      21|      30|     334|     354|       3
---------------------------------------------------------------------------
  334-  354 (33.14/23.89)	IKETERVITALEKEEMRRKAA
  365-  385 (32.01/22.81)	VKEVEEAKSMLAKEFCERQLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.55|      15|      30|     237|     251|       4
---------------------------------------------------------------------------
  237-  251 (28.59/19.14)	LPHSH.PTSRVYSDAQ
  269-  284 (22.97/13.93)	LRHSTvSTSKIQMDPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.48|      31|     147|     454|     511|       5
---------------------------------------------------------------------------
  476-  511 (54.62/68.17)	RHPHVVLLlgaCPEN....GClvYEYMENGSL.DCHISPKK
  625-  660 (52.86/20.59)	RHPNGLLF...CVEDavkrGC..FEDMLDGSVkDWPIAEAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.77|      32|      33|     166|     197|       6
---------------------------------------------------------------------------
  166-  197 (55.95/37.33)	PETCEIYVVCKDRILTKST..NQFTADSSSSFRI
  198-  231 (48.82/31.66)	PEGAEAYTESFSRTRSDKTglSASSITSSGRMRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.85|      17|      35|     531|     547|       7
---------------------------------------------------------------------------
  531-  547 (31.73/21.75)	GLA.FLHNSKPEPI.VHRD
  567-  585 (21.11/11.99)	GLAkLMSDEAPDSVtVYRN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27056 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HSTVSTSKIQMDPRPHLKTPKSGVRAEVEQ
2) KTGLSASSITSSGRMRIGRPGSLPHSHPTSRVYSDAQSS
271
215
300
253










Molecular Recognition Features






MoRF SequenceStartStop




NANANA