<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26977

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWSINMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGDILANLSNPQLRSQAEQCGTLIRSIPTMLSVHSEQLHKTGFPTVHALVLLEGTMNLTGETQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTGELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNSAFEFLLKLTPLLDKADQRCNCDCTNFLLQECSKQGLLSEASMNNLMAKRKADREHAPQLKSDENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTHGSEESTKAASVRALLFDISFLMLCHVAQTYGSEVILSDSSTGAEVFFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNFSEMKLVQMKWNEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLNSENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPAMGMDSMPYWNLLPPKRPSRRC
Length710
PositionTail
OrganismSus scrofa (Pig)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Artiodactyla> Suina> Suidae> Sus.
Aromaticity0.07
Grand average of hydropathy-0.019
Instability index44.34
Isoelectric point6.41
Molecular weight79203.37
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26977
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.83|      39|      68|     481|     522|       1
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  481-  522 (59.92/42.53)	ESTKAASVRALLFDISFLMLChvaQTYGSEVILSDSSTGAEV
  550-  588 (65.92/39.27)	DSTKVESLVALLNNFSEMKLV...QMKWNEACLSISAAILEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.72|      23|      68|     371|     397|       2
---------------------------------------------------------------------------
  371-  397 (34.42/30.52)	GL.......LSEASMNNLMAKRKAdrehAPQLKS
  434-  463 (30.30/16.75)	GLlgvlghmLSGKSLDLLLAAAAA....TGKLKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.52|      58|      68|      92|     150|       3
---------------------------------------------------------------------------
   92-  150 (97.02/74.07)	LCVQALLDIMDMFCDRLSCH.GKAEECIGLcRALLSALHWLLRCTAA.SAERLR.EGLEAGT
  160-  220 (84.50/58.25)	MCLQRLEKTLSSTKNRALLHiAKLEEASSW.TAIEHSLLKLGDILANlSNPQLRsQAEQCGT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26977 with Med24 domain of Kingdom Metazoa
Unable to open file!