<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26976

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWSINMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASLHTSQGLGQGGTRANQPTASWTAIEHSLLKLGDILANLSNPQLRSQAEQCGTLIRSIPTMLSVHSEQLHKTGFPTVHALVLLEGTMNLTGETQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTGELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNSAFEFLLKLTPLLDKADQRCNCDCTNFLLQECSKQGLLSEASMNNLMAKRKADREHAPQLKSDENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTHGSEESTKAASVRALLFDISFLMLCHVAQTYGSEVILSDSSTGAEVFFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNFSEMKLVQMKWNEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLNSENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPAMGMDSMPYWNLLPPKRPSRRC
Length729
PositionTail
OrganismSus scrofa (Pig)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Artiodactyla> Suina> Suidae> Sus.
Aromaticity0.07
Grand average of hydropathy-0.042
Instability index43.56
Isoelectric point6.54
Molecular weight81079.36
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26976
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.13|      43|      67|     500|     547|       1
---------------------------------------------------------------------------
  500-  547 (64.02/54.84)	ESTKAASVRALLFDISFLMLChvaQTYGSEVILSDSSTGAEVffFETW
  569-  611 (74.11/47.40)	DSTKVESLVALLNNFSEMKLV...QMKWNEACLSISAAILEI..LNAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.72|      23|      67|     390|     416|       2
---------------------------------------------------------------------------
  390-  416 (34.42/26.93)	GL.......LSEASMNNLMAKRKAdrehAPQLKS
  453-  482 (30.30/14.69)	GLlgvlghmLSGKSLDLLLAAAAA....TGKLKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     139.28|      39|     266|      78|     117|       3
---------------------------------------------------------------------------
   78-  117 (67.67/41.90)	VLTAISKF...D.DFSRD........LCVQALLDIMDMFCDrLSCHG.KAEEC
  119-  140 (23.12/ 8.61)	.................G........LC.RALLSALHWL...LRCTA.ASAE.
  335-  386 (48.50/25.24)	VLVKLKKYshgDkDFTEDvnsafeflLKLTPLLDKADQRCN.CDCTNfLLQEC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26976 with Med24 domain of Kingdom Metazoa
Unable to open file!