<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26902

Description Uncharacterized protein
SequenceMDFKISISIPPDNPPIAQVDHTGNEFPSNQLSRNEKFVQLLGQIRHQKEVELQKLNEEKNEKQPKEQQKIDERGPNPMQVFYDHINMARIELEQLLFLIDMLKNDQVGLNNNDKPGDSETQQIWDLTCRIATKQQSLKSVSNKLKLGAVRMKDTISTMSGWWNDVSTLRTKWRLKGKDQQSMVAGVSASPLMGMGNQQGKSNKRLSIDYGYYTSGSFIEQTEADLSRGPNGEINIDFPNLPYQASINKRLYINVKSSDSKTFHNHSSYLKKLPSLKSNAALLLAAARQQQGSSMPRTPNSSLPTSSAFNKLRQQHQIQLLQQQQLLQQQNDNPDDPEELHRKFIFNCTSQLNKAQKYQFNFEIFDQLSKEVSHLSSNTSASGSGGSSSSGQPNQSNLNQASPNIPPSGGTSGIASMLGSNSSTSGSGSLSTTTGGENIMLTEKEIRIECGNFNLFIGMDSKPNKNKDKDQQQQQNKEKEKDQQDQQDQDQDQDQDQENEEHESREKDLINIDKLQQLSLVNSCNTSKNIIFTDEEKNRLLFVLKTVLKKISVLQLKRSQKQLTMNLSRRTPRIIFGKKIPPNSHNDDIIFKITSIVKHMDTYLRVYKVLEILEMKLPIRLKSTPAAEPSSSLFILNLIDSSQNIKNPMVPIEISINQNKIDVVQGQNRSFSNKDEIILGSFIINLIRSYFLNNNIHPSHLDIDYNDEEDEQQYFEQNKKFKSSNCFIDENDRVIKNLSTINKHHQAIEKFFKSLNNDISNK
Length761
PositionHead
OrganismDictyostelium purpureum (Slime mold)
KingdomAmoebozoa
LineageEukaryota> Amoebozoa> Evosea> Eumycetozoa> Dictyostelia> Dictyosteliales> Dictyosteliaceae> Dictyostelium.
Aromaticity0.06
Grand average of hydropathy-0.812
Instability index53.28
Isoelectric point8.25
Molecular weight86525.14
Publications
PubMed=21356102

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26902
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.12|      21|      22|     463|     484|       1
---------------------------------------------------------------------------
   53-   71 (24.89/ 9.02)	QKLNEEKNEKQPKEQQKID...
  471-  492 (31.52/17.92)	QQQQNKEKEKDQQDQQDQDQdQ
  494-  514 (33.72/15.11)	QDQENEEHESREKDLINIDK.L
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.95|      22|      42|     372|     393|       2
---------------------------------------------------------------------------
  372-  393 (41.74/22.10)	SHLSSNTSASGSGG.SSSSGQPN
  415-  437 (36.21/18.26)	SMLGSNSSTSGSGSlSTTTGGEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     131.13|      36|      36|     283|     318|       3
---------------------------------------------------------------------------
  219-  287 (30.39/14.02)	E..QTEADLSRGPNGeinidfpNLPYQASINKrlyinvkssdsktfhnhssylkklpsLKSNAALLLAAAR
  288-  323 (62.13/36.88)	Q..QQGSSMPRTPNS.......SLPTSSAFNK..........................LRQQHQIQLLQQQ
  324-  355 (38.61/19.94)	QllQQQNDNPDDPE........ELHRKFIFNC..........................TSQLNKAQ.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.74|      40|      60|     656|     695|       4
---------------------------------------------------------------------------
  656-  695 (71.47/45.78)	NQN.KIDVVQ..GQNRSF.......SNKDEIILGSFIIN....LIRSYF..LNNNI
  703-  758 (42.28/23.81)	DYNdEEDEQQyfEQNKKFkssncfiDENDRVIKNLSTINkhhqAIEKFFksLNNDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      55.78|      11|      58|     521|     531|       7
---------------------------------------------------------------------------
  521-  531 (20.64/10.75)	NSCNTSKNIIF
  565-  575 (18.09/ 8.58)	NLSRRTPRIIF
  582-  590 (17.05/ 7.69)	NSHN..DDIIF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26902 with Med17 domain of Kingdom Amoebozoa
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