<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26898

Description Uncharacterized protein
SequenceMQQQQQQQQQQQQQLLTPQQQQLLQQRQQHLQQQQLLQQQQLQQQQLLQQQQLAQQQQQQQQQNQQSQQQNLQNQNPQAQQQAQQHAQQTQQQQQQQQQQQQQLMQQQLMQQQIILQQLQIHPTNTLTSVQQQYLLEQYDNLLKHVSMVRSNVSDFFNSFIEEAKSQKTTISKDEMKKKLRKSMEYLFTSIGSIDKVSHKISTYSFQISSSNFTSQEALWAYSTGVYDSKNILAQLELRTENYWRSTTSYKSDMALSKLEDKLKSSFPIIFQEEEESSSLSKKRKQISTTLTNTSPVTSTTTPSPLFKLPSTPLITTPPLSYDYFTNIEKVIHSQRQESALEFFEIQKQSLGAPKGLFVECPDVFKCLICFGIPNDKKECFTIDRISFFGIKENFDSLWASSKYNIFKKISENSFEAISYYSANPNGSILKSVLSWIWSFRGLFLEECKGCNDILHLDSTQYMYLPPSFRTFDNFTPYHPSCYQNSLNCKDKQNSKEMNINSNSVL
Length506
PositionTail
OrganismDictyostelium purpureum (Slime mold)
KingdomAmoebozoa
LineageEukaryota> Amoebozoa> Evosea> Eumycetozoa> Dictyostelia> Dictyosteliales> Dictyosteliaceae> Dictyostelium.
Aromaticity0.09
Grand average of hydropathy-0.817
Instability index71.10
Isoelectric point8.25
Molecular weight59101.57
Publications
PubMed=21356102

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26898
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     223.35|      35|      35|       6|      40|       1
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    1-   36 (70.06/18.77)	MQQQqQQQQQQQQQLLTPQ..QQQ.LLQQRQQH.......LQQQQL
   37-   60 (48.99/11.15)	LQ....QQQLQQQQLL..Q..QQQ.LAQQ.............QQQQ
   61-   91 (54.91/13.29)	QQQN.QQSQQQNLQNQNPQ..AQQ...QA.QQH.......AQQTQ.
   92-  135 (49.39/11.29)	.QQQ.QQQQQQQQQLMQQQlmQQQiILQQLQIHptntltsVQQQYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.34|      48|      85|     155|     203|       2
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  155-  203 (76.83/50.93)	DFFNSFIE.EAKSQ...KTTIS.KDEM.....KKKLRKSMEYLFT....SiGSIDKVSHKIST
  228-  289 (53.51/30.50)	DSKNILAQlELRTEnywRSTTSyKSDMalsklEDKLKSSFPIIFQeeeeS.SSLSKKRKQIST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.03|      17|      36|     342|     358|       4
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  342-  358 (30.28/19.39)	EFFEIQKQSLGAPKGLF
  379-  395 (31.75/20.67)	ECFTIDRISFFGIKENF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.44|      33|     145|     306|     339|       5
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  306-  339 (55.31/46.61)	LFKLPSTPLITTPPlSYDYFTNIEKVIHSQRQES
  454-  486 (65.13/50.11)	ILHLDSTQYMYLPP.SFRTFDNFTPYHPSCYQNS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26898 with Med27 domain of Kingdom Amoebozoa
Unable to open file!