<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26896

Description C-type cyclin
SequenceMAASYWDSTQRRFWEFSKEQLAARRRQRQEEERSLVQMCPLPEQRYLNMFFFQQLNRLGKRTNVRQQALATAQVYLKRFYLQVELRRTNPYLVMATALYLACKTEECPQHIRQVSQEAKGLWPDVGAHCLEITRIGECEFYLISELRSQLIVHAPYRTLLSLQGELGLHPDELAHAWNVVNDHYMTDLPLLYPPHVIAVTALLWALVLPPGGGAGGGGGGAGGGGGVGGGAGAGGAGAGGVAGGGGAGGPGAAGAGANAGVGGAVGGNVGGMTPGGGGGLHGPSSLPAPPQLHTSYSSLSTLGGPGATNTPGGSNTPGGGSGGSMLPSTPGMGVGTPNMPGGVAAALVQAQARAAAVAASQQNAAGGGGGGGTPNMGSSMVALGALGSINSMAATMGTMAGMGMGSMNLGGMNMAGMNSMVGGGGLSMNAAGGAAAAAAAAAAANGSQQVVQQGGQQVGSAAAGDDSSPQDGGRGAMLQWLIKWLADSGLDMEAIIDCTQELISFYVCSDEYNEKLTREQINRFIKVRGLDR
Length532
PositionKinase
OrganismGrosmannia clavigera (strain kw1407 / UAMH 11150) (Blue stain fungus) (Graphiocladiella clavigera)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Ophiostomatales> Ophiostomataceae> Grosmannia.
Aromaticity0.05
Grand average of hydropathy-0.072
Instability index50.98
Isoelectric point6.51
Molecular weight53756.14
Publications
PubMed=21262841

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26896
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     361.22|      84|      90|     275|     362|       2
---------------------------------------------------------------------------
  164-  274 (105.88/25.55)	.GELGLH.....PDELAhAWNVVNDHYmTDLP.LLY.....PPhviAVTAllwalvlppgggaggggggagggggVGGGAGAGGAGA..GG.V...AGGGGAGGPGAAGAGANAGV.GGAVGGNVGGMTP
  275-  362 (149.84/44.44)	GGGGGLHG....PSSLP.APPQLHTSY.SSLS.TLG.....GP...GATN.........................TPGGSNTPGGGS..GGSMlpsTPGMGVGTPNMPGGVAAALVqAQARAAAVAASQQ
  366-  449 (105.50/25.43)	GGGGG.GGtpnmGSSMV.ALGAL.GSI.NSMAaTMGtmagmGM...GSMN.........................L.GGMNMAGMNSmvGGG......GLS..M.NAAGGAAAA....AAAAAAANGSQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.78|      10|      28|      44|      53|       4
---------------------------------------------------------------------------
   44-   53 (20.68/14.05)	QRYLNMFFFQ
   73-   82 (19.10/12.55)	QVYLKRFYLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26896 with CycC domain of Kingdom Fungi
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