<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26893

Description Cyclin-dependent protein
SequenceMGYQSRVRVTDKYRVIGFISSGTYGRVYKAVGRQGQQGEFAIKKFKPDKEGEQIAYTGISQSAVREMALCTELSHTNVIRLVEIILEDKCIFMVFEFAEHDLLQIIHHHTQQPRHPIPSTSIKSIMFQLLNGCQYLHTNWVLHRDLKPANIMVTSGGQVKIGDLGLARLFYKPLHSLFSGDKVVVTIWYRAPELLLGSRHYTPAIDMWAVGCIFAELLSLRPIFKGEEAKMDSKKTVPFQRNQMQKIVDIMGLPTKERWPLLVNMPEYQQLSTLQSPLGNQHRHHHSHHHHVSSPLPIQNTSNLEKWYYSTIGHGQTSSPAHHNAIGSTGSASLGVEGYKLLSGLLEYDPEKRLTAEQALSHPFFSTGDILTSNCFEGLRMEYPNRRVSQDDNDIRTSSLPGTKRGGLPDDSIVRASKRIKE
Length422
PositionKinase
OrganismGrosmannia clavigera (strain kw1407 / UAMH 11150) (Blue stain fungus) (Graphiocladiella clavigera)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Ophiostomatales> Ophiostomataceae> Grosmannia.
Aromaticity0.08
Grand average of hydropathy-0.385
Instability index37.01
Isoelectric point9.09
Molecular weight47735.08
Publications
PubMed=21262841

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26893
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.76|      26|      32|     269|     294|       1
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  269-  294 (49.45/31.69)	QQLSTLQ....SPLGNQHRHHHSHHHHVSS
  299-  328 (40.31/24.51)	QNTSNLEkwyySTIGHGQTSSPAHHNAIGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.09|      14|      32|     344|     358|       2
---------------------------------------------------------------------------
  344-  358 (20.56/18.39)	GL.LEYdPEKRLTAEQ
  378-  392 (22.53/14.28)	GLrMEY.PNRRVSQDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.16|      11|      29|     163|     173|       6
---------------------------------------------------------------------------
  163-  173 (19.93/12.11)	DLGLARLFYKP
  193-  203 (20.23/12.39)	ELLLGSRHYTP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26893 with CDK8 domain of Kingdom Fungi
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