<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26889
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MATDSMLEPEAAAVAAGGASAARQRPSKQASRSTRALFPTAYNGQKWARFLDRCLATRLSVDRFTQFAPLQQRKYPVAPALLADLLLRPRSGGVGSSTTSATATATATCDAFIDPRIPAYLQVLLQLRHVDVTSVLQALYRYSTSQRAAQKSAHVKGEQQQQQGDRDGDDDDASGPLTPAVKIEPGSRTGGGPSTQTSVGRTALWGNSYANEETTFYRITRAVRQGTAIRNHREALAIARSMAAWMDLFVAAAAETTVGTVVGTGARDLTAQEHMQEEMGAARAAFVMLLLAVFENEILCAALAIPAVKGARKLLSASIGSFVPVISLTPTPITARLEQFRADTLGSLEPADKKEAEAADLHDIINSTLVGRPLIDDTALFTYLHNRYQGDLQTTAIDLILASFDVLANAVFRTEVHTSAHLLRSFLLNKVPLLLASLASSPLYPFNAEYCISEALSRVDTNAFPTMSSMFDDNQNTTPLTDSARQDFCFACCLHGLIAETSIETLLGEMTYQTLPDGGRFTKERLVQQCLGGGGGGGDAGRITALVGQLDSMDGNAGAACQALVAVLGQLCERRETATLKGLCNQLVRKPLAFDVVLLFEKLSAIVWPLCRLLDTWRYDDDQGEYQPVYEEFGAVLFLLLAFVHRYGLSVADLGIEWPADSFVARLLTKGHLGRTLAEISEQEGENLGNWIRGLFDTDAGGLSDDLMSSCPPQQFYMLTPTLFQQIVQAVSTNALSEEMLKCGIEYLVDTFLLPSLVTALIYLSDMLRVERLTEQRAILRVLHLILQPATISSEAATMLSALLNVVAKPLEQALRTYQRQDPKSQEVDPLLRVLKPNIPRSRRTAAAEHNELTFGNTSNNGGLAAAVRQTVQSFVQWSVHPGVNTMPTWYTHRQFLAALRLMGAPRLLQLILDDLQRQVEAGSGSMAYDVACALVCAPDVTNEPSPAMLYVLGGGGGDRGSDKQQKNDLVPNPATVQRRMSLRQALAFRAEEWKQMQRSGRPSEMVMAETIVRLHRRVEAQMAPPPPAAVAAAAAVEMVDMTDLGGDLGGNLGGDLGADLTSHNLGGLDGTDVAAAAAAALDGAAMDSIAAAAVQAAAADAADAADAMTLDTTAPPASSKTAAGAAVTDLDDLGDLGDLGDLGSLEGMGVMDGLGDIGGASAAGSLDLGDQSMFSDLELISWIDMQ |
Length | 1187 |
Position | Tail |
Organism | Grosmannia clavigera (strain kw1407 / UAMH 11150) (Blue stain fungus) (Graphiocladiella clavigera) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Sordariomycetidae> Ophiostomatales> Ophiostomataceae> Grosmannia.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.011 |
Instability index | 39.84 |
Isoelectric point | 4.92 |
Molecular weight | 126879.66 |
Publications | PubMed=21262841
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP26889
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.48| 17| 40| 233| 251| 1
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233- 251 (24.85/19.49) REALAIARsmAAWMDLFVA
276- 292 (28.63/15.57) QEEMGAAR..AAFVMLLLA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.98| 16| 40| 1123| 1140| 2
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1123- 1140 (25.32/12.20) AAGAAVtdLDDLGDLGDL
1146- 1161 (24.66/ 7.28) LEGMGV..MDGLGDIGGA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 83.96| 29| 40| 358| 387| 3
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358- 387 (46.52/34.81) AADL....HDIINSTlVGRPLIDDTA..LFTYLHNR
396- 430 (37.44/22.70) AIDLilasFDVLANA.VFRTEVHTSAhlLRSFLLNK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 135.48| 43| 419| 457| 547| 4
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480- 541 (65.03/104.26) LTDSARQdfcfacclhgliaetsIETLLGEMTYQ...TL...PDggrFTKERLVQQCLGGGGGGGDAG
913- 961 (70.45/24.91) LDDLQRQ................VEAGSGSMAYDvacALvcaPD...VTNEPSPAMLYVLGGGGGDRG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 115.83| 38| 42| 1032| 1072| 5
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1032- 1072 (56.60/40.30) AAAAAVEMVDMTDLGGDLGGNLGGDlGADltSHNLGGLDGT
1077- 1114 (59.23/32.47) AAAAALDGAAMDSIAAAAVQAAAAD.AAD..AADAMTLDTT
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