<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26887
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MATDSIPLMLDGAMGGMAASMPVDLEVEDVELFGDPVVDLSMPTHAPPTKQLRKRVDEMRINGCCQKIAWSRQGTIASIAPDGQAIELRYLRTNPLDGSWGLSEPTPCSQFGTSPQFSGGPVVHLAWAATGSPELAVIDAAGRVSILTFSMTLNRPYSLRQWDDDPIDDLHAIVGTYWLPLIPQKQSSTFVPAFGPYHPNPAKSALLCVTTSCVLKLFFSQNNNKVQDTSLELESATSSDDLATHASICSEKGGMLLIALVTASRQLKVVRAAIHWASSHQDKQVPPQSIPLNPTMQHRSAAVTTWLQHGAGESQVDISSDQISHLEILPSALVSSNSFAPPLVLTVRSYLPSMTSPFHEQVQSIIDRWELVVDSPAQALHVAFEQVGTKAPPSGTTQPITRLRKLEPIVLDKVIISIHMMQLGKVICIAFSDGTVQYRDRLTMEEIYNETNLSRIMTLSQANFQFANPTPCVAVAFSPTNCSFSQVCEDGKVKWNSLKHVGPDLGPGHKDAEYAAVVAGLTIAVSTASLNQMSYDDVLATARQFVDKPRFAYDWMVDVVRMLKINVDYSEESHHDQLMRNHSLQLCLSILNHMGFRGEYQPRTFCGKFAMLSLNVRNIVILITIASNTPSTFKEKLNPLDEPEVVDALAGCAKWALDLLAYIADCIFNLLDDAKFMQMLSTSSFQEMTAYLQEKNEVALHLLLCSSTRGFLSAACRRLVHLDAVSTKATQYYELQSQMAASGNGTEHATRPVLVPLSLAYQKMQQYTSSSLVKVTEFDKLLMGLGEDIRQTYQSRTMGQAQAQAQAQGQGQGQGQGQGQVQVQQDANMKRLQAHCELALLLANNPPQSFQPMLKKFFSENVRAFRAMTDPAKLYFANYSILEVEDDVRALQAKRARHCYIDVFKRVELAGPPRLDGGGTSELMPPMGMHGPTGLWRRCARCTAVMEDLSGHKPGYTFVLSQQHAWENLTIRINRSGTMFTGLVEEIGEVSVLNRQDETGGTSLTIALPAGSELLSDAHLGDSIAINGCCLTVTELVAGRTAFVVGVAPETLRVTNLGDLAVGGRVNLERAVRADTRMGGHFVQGHVDTVAQITRVAPDGNAQTMRFSLRDRAALQHIVYKGFIAIDGTSLTVTAVDDAAGWLEVMLITYTQSRVALAAKREGDSVNIEVDVLSKYAQKNISVYIDSLVGGSGIESLVQRKIESALDAAKT |
Length | 1211 |
Position | Tail |
Organism | Grosmannia clavigera (strain kw1407 / UAMH 11150) (Blue stain fungus) (Graphiocladiella clavigera) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Sordariomycetidae> Ophiostomatales> Ophiostomataceae> Grosmannia.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.079 |
Instability index | 39.39 |
Isoelectric point | 5.89 |
Molecular weight | 132361.75 |
Publications | PubMed=21262841
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP26887
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 307.18| 104| 373| 65| 179| 1
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65- 179 (168.25/128.66) CqkIAWSrQGTIAsiAPDGQAIELRYLRTN.....PL.DGSWGLSEPTPCSQFGTSP...QFS....GGPVvhlAWAATG..SPELAV..IDA..AGRVSILTfsMTLNRPySLRQWD.DDPIDDLHAIVG....TY.WL
428- 556 (138.93/79.64) C..IAFS.DGTVQ..YRDRLTMEEIYNETNlsrimTLsQANFQFANPTPCVAVAFSPtncSFSqvceDGKV...KWNSLKhvGPDLGPghKDAeyAAVVAGLT..IAVSTA.SLNQMSyDDVLATARQFVDkprfAYdWM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 100.58| 29| 32| 704| 732| 2
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704- 732 (49.67/29.18) LCSSTRGFLSAACRRLVHLDAVSTKATQY
739- 767 (50.91/30.07) MAASGNGTEHATRPVLVPLSLAYQKMQQY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 277.48| 92| 99| 975| 1072| 3
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975- 1072 (134.57/129.90) RSGTMFT.GLVEEIGEVSvlnRQDETGGT.SLTIALPAGSELLSDAHLGdSIAINGCCLTVTEL..VAGRTAfVVGVAPETLRVTnLGDLAVGGRVNLERAV
1077- 1172 (142.91/111.85) RMGGHFVqGHVDTVAQIT...RVAPDGNAqTMRFSLRDRAALQHIVYKG.FIAIDGTSLTVTAVddAAGWLE.VMLITYTQSRVA.LAAKREGDSVNIEVDV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 80.94| 23| 31| 784| 806| 5
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784- 806 (39.61/22.68) GLGEDIRQTYQSRTMGQAQAQAQ
815- 837 (41.33/23.96) GQGQGQVQVQQDANMKRLQAHCE
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