<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26821

Description Uncharacterized protein (Fragment)
SequenceMVVGAAEAVCNDIVFLVEGTAACGAYMNEIKMNYICQTVEYFNGGPIVEDRDCGSETFATLYSLVVYHSSDCLPADMVDVYGPFRNPHKFLQLLDKLDFSGGHAEHMASLTEGLATTLECFKDLTLLRDPGLKAQKFCILICNSPPYNLPVMDLPSFRGLTLEQLAVLVNENNIQLSIISPRRIPTWINLFDKAGGDSMAANSKHYAKDLRHLVMLNGFCLQESTVSQPPIPNIPIPTVPTSPQGLTPNAGQMVNVNQQMLNQQQQQQLAARKLAMEQQQLQQQQQQQQQQQQQQQQQQQQQQQQQPQQSQPQNLNFSINPANPNLGMQQNIPQQMQQQQPQSQQINVPVAAAPGIIQQQAAPVAGAAPANPARERQVIWQGVLEWQEKTRDPQKLPRHVPCQVSATVTNGESEVKAEHWPQKLLMQLIPKTLISNFGGAHFRNARSVMFHPQECEALEALAKVMSTGYAGCVHFTGMVNPNACEIKVLMLLYSPDKKAYIGFIPNDQAGFVDRIRKVIQQQKSKQVQPPGPGQAGPNPNIPQQAGQNILVTQTNPLSMGGGQMSAAPQPQQQQQQQMQQPQMMGNPQQPAMAAPTPMTNPVRGAAPPTPAQLVAERQQNLMTIKQLQQTLEAAQQKDIHLKEQQQRRAQLLMQQQQLMQQQQQQIQPNQQLPMQQQLQLQQQQMGQQQQMGQ
Length693
PositionUnknown
OrganismDaphnia pulex (Water flea)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Crustacea> Branchiopoda> Diplostraca> Cladocera> Anomopoda> Daphniidae> Daphnia.
Aromaticity0.05
Grand average of hydropathy-0.555
Instability index63.21
Isoelectric point7.15
Molecular weight77173.19
Publications
PubMed=21292972

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26821
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     113.75|      15|      15|     278|     292|       1
---------------------------------------------------------------------------
  278-  292 (30.26/ 8.24)	QQQLQQQ.QQQQQQQQ
  297-  311 (30.04/ 8.11)	QQQQQQQ.QQQPQQSQ
  329-  344 (26.46/ 6.04)	QQNIPQQmQQQQPQSQ
  655-  669 (26.98/ 6.34)	QQQLMQQ.QQQQIQPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.05|      23|      26|     526|     550|       2
---------------------------------------------------------------------------
  528-  554 (35.60/14.29)	QP..PGPGQ..AGPNPniPQQAGQNILvtQT
  555-  581 (35.45/10.29)	NPlsMGGGQmsAAPQP..QQQQQQQMQ..QP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.69|      22|      27|     582|     606|       5
---------------------------------------------------------------------------
  226-  247 (38.67/12.89)	VSQPPIPNIPIPTVPTSP.QGLT
  584-  606 (38.02/22.18)	MGNPQQPAMAAPTPMTNPvRGAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.23|      19|      37|     636|     654|       7
---------------------------------------------------------------------------
  636-  654 (32.03/12.61)	QKDIHLKEQQQRRAQLLMQ
  675-  693 (34.20/14.03)	QQQLQLQQQQMGQQQQMGQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26821 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GIIQQQAAPVAGAAPANPARERQVIWQGVL
2) PIPNIPIPTVPTSPQGLTPNAGQMVNVNQQMLN
3) QQQQLAARKLAMEQQQLQQQQQQQQQQQQQQQQQQQQQQQQQPQQSQPQNLNFSINPANPNLGMQQNIPQQMQQQQPQSQQINVPVAAA
4) RIRKVIQQQKSKQVQPPGPGQAGPNPNIPQQAGQNILVTQTNPLSMGGGQMSAAPQPQQQQQQQMQQPQMMGNPQQPAMAAPTPMTNPVRGAAPPTPAQLVAERQQNLMTIKQLQQTLEAAQQKDIHLKEQQQRRAQLLMQQQQLMQQQQQQIQPNQQLPMQQQLQLQQQQMGQQQQMGQ
355
230
265
514
384
262
353
693










Molecular Recognition Features






MoRF SequenceStartStop




NANANA