<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26811

Description Uncharacterized protein
SequenceMSFSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNINGALVPPAALLSIIQKGLQYTEAEISVGDDGSERPMESLSLIDAVMPDVVASRQQQMQNNQKPQVVKTEPPNSNGDEPMHSYRREEETGVEIPASKSTVLRGHESEVFICAWNPTTDLLASGSGDSTARIWNMNDNSSSPTQLVLRHCIQKGGTEVPSNKDVTSLDWNCDGTLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVDWQSNVSFASCSTDQCIHVCKLGSDKPTKSFQGHTNEVNAIKWDPQGNLLASCSDDMTLKIWSMKQDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNMNLILASASFDSTVRLWDVERGLCIHTLTKHTEPVYSVAFSPDGKYLASGSFDKCVHIWSTQSGQLLHSYKGTGGIFEVCWNSRGDKVGASASDGSVFVLDLRK
Length487
PositionTail
OrganismDaphnia pulex (Water flea)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Crustacea> Branchiopoda> Diplostraca> Cladocera> Anomopoda> Daphniidae> Daphnia.
Aromaticity0.08
Grand average of hydropathy-0.400
Instability index41.15
Isoelectric point5.50
Molecular weight53393.95
Publications
PubMed=21292972

Function

Annotated function 
GO - Cellular Component
histone deacetylase complex	GO:0000118	IBA:GO_Central

GO - Biological Function
transcription corepressor activity	GO:0003714	IBA:GO_Central

GO - Biological Process
histone deacetylation	GO:0016575	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26811
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     341.91|      40|      40|     295|     334|       1
---------------------------------------------------------------------------
  128-  172 (50.97/25.53)	GVEIPaSK.....StvLRG.HESEVFICA......WNPTT.........dlL.A.SG...........SGDS...........TARIWNM
  175-  225 (38.96/17.92)	NSSSP.TQlvlrhC..IQK.GGTEVPSNKdvtsldWNCDG.........tlL.A.TG...........SYDG...........YARI.W.
  226-  273 (22.57/ 7.53)	TTDGR.LA.....S..TLGqHKGPIFALK......WNKKG..........nY.IlSAgvdkttiiwdaSTGQ...........C......
  274-  309 (39.80/18.45)	......TQ.....Q..FAF.HSAPALDVD......W..QS........nvsF.A.SC...........STDQ...........CIHVCKL
  310-  351 (66.30/35.25)	GSDKP.TK.....S..FQG.HTNEVNAIK......WDPQG.........nlL.A.SC...........SDDM...........TLKIWSM
  352-  409 (37.22/16.82)	KQDTC.VH.....D..LQA.HNKEIYTIK......WSPTGpgtnnpnmnliL.A.SA...........SFDStvrlwdverglCIH....
  410-  444 (41.26/19.38)	.............T..LTK.HTEPVYSVA......FSPDG..........kYlA.SG...........SFDK...........CVHIWST
  445-  485 (44.82/21.64)	QSGQL.LH.....S..YKG..TGGIFEVC......WNSRG.........dkV.G.AS...........ASDG...........SVFVLDL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26811 with Med16 domain of Kingdom Metazoa
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