<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26739
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MMDIAYVCEWEKRPKSNHCPSIPLVCAWSCRNLIAFTTDLKNEEDDKGLDNAFITNITTPVDLSHMIHIIDTDHPWDVYSINSGHNEIISCLEWDQSGSRLLSADGDGQIKCWGMTEHLVNSWECAQSSSVDGDPIVALSWLHNGVKLALHVEKSGSTNFGEKFSRVKFSPSLTLFGGKPMEGWLAVTVSGLVTVSLLKPNGTLLTASESLCRLRGRVALADIAFTGGGNIVVAATDGSSSSPVQFYKVCVSVVNEKCRIDTELLPSLFMRCTTDPLRRDKYPAVTHLKFLTRENSEQVLLCASSQMGSIVECWSLRKEGLPVNNIFQHRSPVVGEKQPMTLKWRILSTTNDLDRVSAVALPKLPISISNTDLKVASDTKFFPGLGLALAFHDGSIQILHRLSLQTVGMFYGSSGSSQRVGEEPAIKRQRAGGPMLHFKALQFSWTSLALVGIDNHGKLHMFRVSPSMGQMLDMNTLLRHLLFLLEYCMVTGYDWWDVLLHAQPGMVHNLLEKLHEEYMRQNQALQQVLSTRIVAVKASLCKLSSATAARACDFHAKLLLIAISSTLKSLLRPHVLNTPDKSPGDRLSEICAKNTDTDIDKVMINLKTEEFVLDGPPLQSLQQLIQWVGDFVLYLLANLPNQGSIVRPGFGFLRDGASLGMLREMLVMIRIWGLLKPGCLPIYTATSDNQDSMFLLFRLLTKLWLCSRDESHPQDPDETLIDECCLLPSQLLVPSMDWLPINDGVITKIQGKHQLRLQFGKPYTLPGVNPNAQVEIFRSPASQRVDHLRCLHLGISPTEDSKACTRCGCVTMLRSPNKTNATRQWEQRWIKNCLCGGLWRRIPSTLS |
Length | 847 |
Position | Tail |
Organism | Danio rerio (Zebrafish) (Brachydanio rerio) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Actinopterygii> Neopterygii> Teleostei> Ostariophysi> Cypriniformes>
Danionidae> Danioninae> Danio.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.062 |
Instability index | 44.67 |
Isoelectric point | 7.72 |
Molecular weight | 94283.06 |
Publications | PubMed=23594743
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IBA:GO_Central
|
GO - Biological Function | |
GO - Biological Process | positive regulation of transcription, DNA-templated GO:0045893 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP26739
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 237.83| 74| 520| 15| 291| 1
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200- 290 (110.31/329.85) PNGTLLTASeslCRLRGRVALADIAFTGGGNIVVAATDGSSSSPVQFYKVC.VSVVNEKCRIdtellpslfmrcttDPLRRDKYPAVTHLKF
716- 790 (127.52/24.67) PDETLIDEC...CLLPSQLLVPSMDWLPINDGVITKIQGKHQLRLQFGKPYtLPGVNPNAQV..............EIFRSPASQRVDHLRC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 103.93| 29| 520| 15| 107| 2
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72- 100 (55.74/112.34) TDH...PWDVYSINSGHNEIISCLEWDQSGSR
116- 147 (48.18/32.33) TEHlvnSWECAQSSSVDGDPIVALSWLHNGVK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 42.95| 10| 520| 15| 41| 4
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4- 13 (20.84/14.94) IAYVCEWEKR
22- 31 (22.11/15.76) IPLVCAWSCR
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