<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26737

Description Related to SSN3-cyclin-dependent CTD kinase
SequenceMSSSDPLRPSGYFYSDTEDPFAAAFWSQFQDPHDLAAQHIPHDASPGAAMKAYREYRDRVRKPVLATYTILGFLSSGTYGRVYKARLRTPPPMIAAGAAAGVAAPNASTSAGTVGGNGPTAKKRGGLLQQHQLLDSPSAASSMHATPKSAVDGGAGHGTPTASPGLSASLAAAAAAASSAQNASGRIDTSTAQSSGSIPDNQIYAIKKFKPDTKETDATVYTGISQSAMREISLNRELSHANIVTLHQVMLEEKAIYMVFEYAEHDLLQIIHYHSTALRAPIPPAVLKSLLWQLINGVAYLHANWILHRDLKPANILVTSHGVVKIGDLGLARLYSSPLQSLYNGDKVVVTIWYRAPELLLGARHYTTAIDMWSIGCIWGELLALRPMFKGEEAKMDPKTKAAPFQTDQLKRIVEVLGTPHKDRWPAVEAMPDYKGWWPHLRLDNYPKTLARWYATRHKSDDGYTLFDALLQYDAEQRLTANQALEHAWFTASEPRPSANAFASLAKPLGTYPNRRVIQDDMDPKMKSGYQPPIDTHHVAATTRYNLNSGQPHRLAQLLHHQEQLRHQQMLHLQRAPPQMNTQAGYARTGAAVPIAPPTGGPAAPPPITTTTTAPSTTNNNPLITIGSLSNPPTAHSTDTDTPSSASTTAAAAPQPRPNLVATATRNQQRKRQRI
Length675
PositionKinase
OrganismSporisorium reilianum (strain SRZ2) (Maize head smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Sporisorium.
Aromaticity0.07
Grand average of hydropathy-0.407
Instability index43.54
Isoelectric point9.42
Molecular weight73338.03
Publications
PubMed=21148393

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26737
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.52|      20|      26|     576|     595|       1
---------------------------------------------------------------------------
  103-  119 (23.69/ 8.11)	AAPNASTSAG..TVGGNGP.
  576-  595 (35.83/15.76)	APPQMNTQAGYARTGAAVPI
  604-  623 (35.01/15.25)	APPPITTTTTAPSTTNNNPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.36|      19|      26|      54|      72|       2
---------------------------------------------------------------------------
   54-   72 (33.61/22.65)	REYRDRVR..KPVLATYTILG
   81-  101 (28.74/18.23)	RVYKARLRtpPPMIAAGAAAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.57|      20|      26|     136|     158|       3
---------------------------------------------------------------------------
  137-  156 (33.85/13.83)	PSAASSMHATPKSAVDGGAG
  633-  652 (31.73/10.92)	PTAHSTDTDTPSSASTTAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.39|      26|      26|     259|     284|       4
---------------------------------------------------------------------------
  259-  284 (45.89/31.17)	VFEYAEHDLLQIIHY.HST.ALRAPIPP
  286-  313 (35.50/22.36)	VLKSLLWQLINGVAYlHANwILHRDLKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     204.03|      61|      90|     417|     485|       5
---------------------------------------------------------------------------
  417-  485 (99.72/73.75)	LGT.PHKdRWPAVEAMPDYK.GWWPHLRLDNYPKTlarwyaTRHKSDDGYTLFDALLQYDAEQrLTANQAL
  509-  571 (104.32/57.04)	LGTyPNR.RVIQDDMDPKMKsGYQPPIDTHHVAAT......TRYNLNSGQPHRLAQLLHHQEQ.LRHQQML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.43|      16|     474|       4|      32|       7
---------------------------------------------------------------------------
    4-   32 (17.30/40.39)	SDPlRPSgyfysdtedpfAAAFWSqFQDP
  493-  508 (31.12/16.67)	SEP.RPS...........ANAFAS.LAKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.19|      14|      17|     338|     353|       8
---------------------------------------------------------------------------
  338-  353 (20.95/23.35)	PlqSLYNGDK...VVVTIW
  357-  373 (20.24/13.76)	P..ELLLGARhytTAIDMW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26737 with CDK8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PNASTSAGTVGGNGPTAKKRGGLLQQHQLLDSPSAASSMHATPKSAVDGGAGHGTPTASP
2) PNRRVIQDDMDPKMKSGYQPPIDTHHVAATTRYNLNSGQPHRLAQLLHHQEQLRHQQMLHLQRAPPQMNTQAGYARTGAAVPIAPPTGGPAAPPPITTTTTAPSTTNNNPLITIGSLSNPPTAHSTDTDTPSSASTTAAAAPQPRPNLVATATRNQQRKRQRI
105
513
164
675










Molecular Recognition Features






MoRF SequenceStartStop




1) PLRPSGYFYSDTEDPF
6
21