<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26733

Description Uncharacterized protein
SequenceMTSFQPSLLRGSGGGGGGGRGGGGGSMPSFSSSASQRSRHDETQLPEAYQQERPPWRPPLHPAAADRDVPDLFPTKPNQPEDDMSQISVRKGFASRAYVRNESFSAHEMIYTRLASPDALATLSSWMDEVMLRRRELDRASVAPSQYKAPSRVTLNEAKLANYVKDLADPAVPLTRLSRSVPHGFRGEKLFEMLWAGGALPSAATANMATNNYFTHRIPNASTASTPSASAPASSATTAARKSVDISRAVWFIRALGAAELASLRNKSAATIVPEITSNLCTWMAKQVAELSLVQAAESSSTAAASPAPVSPSTHLPRTPSAGPAPLSRSLAAVHFARTPSNLNPTSSPSPAPTKEVCSVLQSEVDEERWIAKWSYSLSLARHLHAQNLLDRSILVRWIVDAFAASNLVQLPFMVELVQEVLVFILRRRCFVRPFLAALLVQIPNLDARLDPLAGGRLRTKLVLLFRIVCENSPDALITPRLWSEHSATLLHLLNEISADSESLPSFGSPDFVEQALRPRVDRLLLHPDIGTSGRSENAEPPPALSSTLQQHLDIQALDSFDMSTIDRVFLQKANGAHRHAKHDRDDAVWAPRIDTILTWACTDRRSGVARQYLAATLVEKIRFGVSWEESSEETDQVSLPAFDLEHHSKKTRKINVEPMLIKWLGDVESALGHAHDETATQGRTCLLATIDVTAIVVLVGELARRGVFSYTKYLQRLIARGMTTASSTGIQQQQKDGGESAASAPSSSSSTSASRDSLHLRLLRSLPLYDQPASVYLQRRQAIYGDRTKETYEDAAQRRALRQLQSFLPFAFAEQDGQAAPAAPAQPSEGESRDAQHALSRLWSASRFVRCKIFRSELLPAVTARVEALNGEQLSQVSAVLVMADDYEGLAQLLATLLLRPLSDSLARAAFNMVIEYSLIWRSMDIMGTLNQLVRQQLNHSSSIRNDRQAVMASTTLLRLRTLIEGIPSRIIAPPLDPSAEHDAVQQHVQALRSNVDALLHRFAKLTGSTAAKSSNDSNTPAPAEGSEMLTPFRSLFIQPDATSDEIIERAIVESVLARSDASLVPAAVRLIDQLYLEASLEIDERHARWLSHLVHSIENGTHTDASIKVLLQLLTRLVAHGTLNLQLAMDTFLLPYLLSSVRRLTDPATRGTEPSLHLGAVISSLGEIFASSVGETVPATCYEDMRAFGAQAMLLFAQVNLPSLLRAATCLICASDESSIVDAADKAKIEAFWKALLRSQPMQFAFRQDPRLCMLTIKDTCKSMWGCNPSRIIDLAMACLDPTSLLLRDVTSIDAASVKARLDGWDTAVVANELVEIFERLQLVESSFQSRADSKTKALASGIFDDLFVRLPDIGAQLIRDCQSSGLISRFTDIGIKILSDKVKASAEKDVDAAEKAKQLDARKEDASVDGHASAGPEPDQTASSKAGGWEDTNAAAAVEPARSPREQEAELTMRSVLRMCEQQASFIFNATDADSCGQLLLHIVTALESALNSVDAGARDDVTRLSSLLHRGLTFQLLHLVMRFGCLWNGSIKTVALRLVKALLELTRQAGERADCGAHFALLLDSLSFVLDELPPPLLSACLPELESQLQAMELATQERTDKLQQLSFRLDNATTVSGWFVASSAGAALKRGWYTPGGLNPWECAEYLDAPPAGNAVGTAGTAATGVGGNTVRTGPVQVRGTAANARTTGAPAGVQAAAGASNGSETSTLPGARTGWTSKLSLNTAIPLSMLGLRVTRDLVPQYASPASPASPASPSAASVASNDASSVASGHPTAAATATATASTEREDPVSSLPIFVESERTYGPRMAGEPAFSRDLRRGLLLQPVLPAQRVDGSEEDGVAVAGSGMQSSMAGLASDAIPVIDLTWDDDEAMPASLHQQSQQQQTGGSATATATAAASATATTSRKRRMSKRE
Length1919
PositionKinase
OrganismSporisorium reilianum (strain SRZ2) (Maize head smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Sporisorium.
Aromaticity0.05
Grand average of hydropathy-0.151
Instability index51.83
Isoelectric point6.10
Molecular weight206725.55
Publications
PubMed=21148393

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26733
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     986.61|     372|     523|     166|     582|       1
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   54-  318 (207.41/97.23)	..............................................................................................................................................PP..WRPPLHPAAADR...............dvpdlfptkpnqpeddmsqisvrkgfasrayvrnesfsahemiytrlaSPDALATLSSW........................................................................................................................................mdevmlrrreldrasvapsqykapsrvtlneaklanyvkDLADPAVPLTRLSRSVPHGFRGEKLFEMLWAGGALPSA...ATANMATNNYF...T................................................HRIPNASTAST.PS..ASAPASSATTAARKSV.DISRAVWF..IRALGAAEL.ASLRNKSAATIVPEITSNLCTWMAKQVA..EL.SLVQAAESSSTAAASP.APVSPSTHLPR
  321-  582 (240.36/190.57)	SAGPApLSRSLAAVHFARTP...SNLNPTSSP.....SPAPTKEVCSVLqSEVDEERWIAKWSYSL.......SLARhlHAQNLLDRSILVrW.IVDAFAASN.LV..QLPFMVELVQEVLVfILRRRCFVRpfLAALLVQIPN..LDARLDPLAGGRLRTKLVLLFRivceN................................................SPDALITPRLWsehsatlLHLLNEI........SADSES.LPSFGSpdfveQALRPrVDRLLLHPDiGTS.............GRSENAEPPPALSstLQQHLDIQAldSFDMStidrvflqkangaHRHAK................................................................................................................................................................................................................................................................................
  637-  834 (84.47/23.50)	.................................................................................................................................................................................................................................................................................................................................................................hdrddavwapridtiltwactdrrsgvarqylaatlvekirfgvsweesseetdQVSLPAFDLEHHSKKT.RKINVEPML.IKWLGD.VESAlghAHDETATQGRT...CllatidvtaivvlvgelarrgvfsytkylqrliargmttasstgiqqqQKDGGESAASA.PS......SSSSTSASRDSL.HL.R...L..LRSLPLYDQpASVYLQRRQAIYGDRTKETYEDAAQRRAlrQLqSFLPFAFAEQDGQAAPaAPAQPSEGESR
  835- 1233 (454.37/220.92)	DAQHA.LSRLWSASRFVRCKifrSELLPAVTArvealNGEQLSQVSAVL.VMADDYEGLAQLLATLllrplsdSLAR..AAFNMVIEYSLI.WrSMDIMGTLNqLVrqQLNHSSSIRNDRQA.VMASTTLLR..LRTLIEGIPSriIAPPLDPSAEHDAVQQHVQALR....S................................................NVDAL.............LHRFAKLtgstaaksSNDSNTpAPAEGS.....EMLTP.FRSLFIQPD.ATSdeiieraivesvlARSDASLVPAAVR..LIDQLYLEA..SLEID.............ERHAR...................................................wlsHLVHSIENGTHTDASIKVLL...QLLTRLVAHGTLNLQ...LAMDTFLLPYLlssV................................................RRLTDPATRGTePSlhLGAVISSLGEIFASSVgETVPATCYedMRAFGAQAM.LLFAQVNLPSLLRAATCLIC...ASD....ES.SIVDAADKAKIEA...............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.18|      23|     288|    1396|    1432|       2
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 1404- 1426 (40.49/23.92)	ARKEDASV.DGHASAGPEPDQTAS
 1766- 1789 (34.68/ 8.94)	ASNDASSVaSGHPTAAATATATAS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.73|      14|      15|    1680|    1693|       3
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 1680- 1693 (24.37/14.93)	P..VQVRGTAANARTT
 1696- 1711 (19.36/10.11)	PagVQAAAGASNGSET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.79|      51|      55|    1478|    1530|       4
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 1478- 1530 (82.15/60.85)	SCGQLLLHIVTALESAlnSVDAGARDDVTRLSSLLHRGLTFQLLHL..VMRFGCL
 1534- 1586 (78.63/51.81)	SIKTVALRLVKALLEL..TRQAGERADCGAHFALLLDSLSFVLDELppPLLSACL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.80|      45|     358|    1242|    1287|       5
---------------------------------------------------------------------------
 1242- 1287 (81.92/63.95)	QPMQFAF..RQDpRLCMLTIK.D..TCKSMWGCNPSRIIDLAMACLDPTSL
 1594- 1643 (65.88/45.04)	QAMELATqeRTD.KLQQLSFRlDnaTTVSGWFVASSAGAALKRGWYTPGGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.65|      15|      17|    1349|    1363|       8
---------------------------------------------------------------------------
 1349- 1363 (26.30/18.00)	LFVRLPDIGAQLIRD
 1369- 1383 (25.34/17.03)	LISRFTDIGIKILSD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26733 with Med12 domain of Kingdom Fungi
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