<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26730

Description Uncharacterized protein
SequenceMGVSSTARLPSLGAQSIPPLFSHLQHTSNASVVARWSITIRSFRAVPVPTNAWPPANQYDSSFSATISDDASLNAGTNLGSATGPSAQAGSLGSAATSSGGAGSSASGAPPLTKPRTMWQVWLSDHPGVVFVIIEDTGRSSRAKVWRDWEVSTKKWKKHKRREIEARRKQEAQKEAEQTLTQSAEGSKIESDEKPAGQADSSEQDKAEPMVVDIAASSTAEGTIENAAAQAPSNADAGAQQAEAGSETKHDPEQEPIETAGPKPKLRLPSHTRYTVSALTSSMSAMLTGLNLPPPHGAPVGTAGPGAWVPRGAAVSIEGLMLEINSQSLNALPGISPALASVSTTEDAALLSRSSGGSNSSNAGVDWRVRVGSVMGGGGRSAGAIVEAEFLPASTLLPTSKFLHDFLHSLFPPGLVPMPAPVAPMSAPGMPNINSLRGTTAPSRVGSATGTPRSSHATLGAAPAMNGNAAATAAGAVANGSGFSYTIGGGAGAGAAPPNRNFNIPVVSDQLWEEVVPRSGESWRKRIAKRSQQMRVSARMQRSQRKNAVATSSGEQNGSSSKELNGDTDAFGWHTFGSDDDAETAAPSRTNGTQQNDTDEELSSSDSEAEPTLTSGSDAAPVAGGLTGTAVTMQQVDEDDDDDDDDDRPLGAPTWLSSAKRTSSASNVTNPPSTAAAVKREDTAVQLLFQGLRSDDVDAESSAEQDGWSGIERGRRIAFQYVQMLRAEGII
Length731
PositionHead
OrganismSporisorium reilianum (strain SRZ2) (Maize head smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Sporisorium.
Aromaticity0.04
Grand average of hydropathy-0.461
Instability index53.60
Isoelectric point5.21
Molecular weight75701.29
Publications
PubMed=21148393

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26730
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     348.24|      60|     153|      61|     121|       1
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   61-  111 (73.79/26.64)	....................SSF.............SATISDDASLNA.GTNLGSATG.PSAQ..AGSLGSAATSSGGAGSSASGAPP
  174-  217 (33.32/ 7.79)	....................KEA.............EQTLTQSA...E.GSKIESDEK.PAGQ..ADSSEQDKAEPMVVDIAAS....
  218-  265 (50.21/15.66)	....................STA.............EGTI.ENAAAQA.PSN.ADAGA.QQAE..AGS.ETKHDPEQEPIETAGPKPK
  266-  319 (58.09/19.51)	LRLPsHTRYT.........................vSALTSSMSAMLT.GLNLPPPHG...AP..VGTAGPGAWVPRGAAVSIEG...
  325-  366 (31.51/ 6.94)	.........................................NSQSLNA.LPGISPALA.SVST..TEDAALLSRSSGGSNSSNAGVD.
  427-  476 (47.42/14.35)	....................APG.............MPNINSLRGTTA.PSRVGSATGtPRSS..HATLGAAPAMNGNAAATAAGA..
  502-  587 (53.91/18.18)	FNIP.VVSDQlweevvprsgESWrkriakrsqqmrvSARMQRSQRKNAvATSSGEQNG.SSSKelNGDTDAFGWHTFGSDDDAETAAP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26730 with Med20 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAAPPNRNFNIPVVSDQLWEEVVPRSGESWRKRIAKRSQQMRVSARMQRSQRKNAVATSSGEQNGSSSKELNGDTDAFGWHTFGSDDDAETAAPSRTNGTQQNDTDEELSSSDSEAEPTLTSGSDAAPVAGGLTGTAVTMQQVDEDDDDDDDDDRPLGAPTWLSSAKRTSSASNVTNPPSTAAAVKRED
2) KKWKKHKRREIEARRKQEAQKEAEQTLTQSAEGSKIESDEKPAGQADSSEQDKAEPMVVDIAASSTAEGTIENAAAQAPSNADAGAQQAEAGSETKHDPEQEPIETAGPKPKLRLPSHTRYT
3) NAGTNLGSATGPSAQAGSLGSAATSSGGAGSSASGAPPLTKPRTMW
4) SAPGMPNINSLRGTTAPSRVGSATGTPRSSHATLGAAPAMN
494
154
74
426
682
275
119
466










Molecular Recognition Features






MoRF SequenceStartStop




1) ESWRKRIAKR
2) RPLGAPTWL
521
648
530
656