<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26729

Description Mediator of RNA polymerase II transcription subunit 13
SequenceMWNQASASIPAAAMGGGSGNPNSSMAHTTAGPFASHARSTSIANGPPTHRRTTGGVGPAQHASSPSSNPIFPRPFPNAAFPGTVSAPRSAAAPNTALATPRSIQHLSLLTTETPTSIARLAFPPHTAIYWHRLQKNSDAPATTTGHDHQRQDAATSSTAASASSSPSWHTGVQRVLSSANKSRSQPRAPEEVHGQDHAALQRLLKVPLVYASSKVSPSESLASSTSKAELWIFAVVTDQDGLSDNATSASIIEATDTGAAHASNRDADASQDAAAAARGDSTPLDPTLARHLPADLVKSLSRLSTSAHASSGSYRLSAAATNSIDGKGKQSSLTSQQRKAHKRFMASIKARFIDSLASGQPTSPKQKRDRLRLGDSVVFLPSRSSGLSSTATNDAGWFAAPGRPKTSLGGVSDSRCLLTQLAVSLTATSLYVRATSRPLAALPLINTRFASISTPLPPSPARPTLLIAPLGCHVELAGMVPTTLVAQEHLSELGSAFAGFGTAPNDPSPFASGVAICAFPQSPSGLQSHQDQPHLQDPQQLPEASLVPSAQGEASDQDMPLAAPSSAGIDRESANATGQGSLQFLWPAAWCLVVQDRATASTGALGLGSNATNDLKSMQSQPMTPLKELVSFTLKMLNDANESALAQGTAPYTPGEPDDASLARHRASTRADITPASLSFADFDFAMPTAGSATSSHALPAAGQSVPPGTASPLKRESTSIEPAQAANSTEAFGQDLNWMQFLPPQGSEAPASSSEPAFAMQIDATSAGSILNATAKVTDEAKHSHIDPTSTNWLLSGNSSSVPESGATAAAHAPNTAASQSLLQPLPQMQSHESTPFQGQHATTPLGFAQPTSSKRKAGEGDIFGNLGLLTEDDFSFFDESAFGLDAEGDLAQHMDQTAEGVSMGPSQHHLTFDQPQAGANHATAPNMSMANEAQPASSTAPAVIDDVAMEDVGQSSLDALFSAIPGLQDAMASSESSHPQSAPLQTSLSTSATAVSQLAPPRLGHSAAQDMTVANAGSTHAFHPAMSSFTPRDASGATPFGDPASLPGFTPSSLTESSPAFGNPHYKTPRTPYSPAEEFRDGATIVDLHNGHRMGESAQGYRDRNAASAPDLHASDQHPLSGHKADTLLHDDQQLRLADASTAAAAAANAAMETDASSRKRTAIVPNAFLPLRPPEARKPLQRLPAGARANLGRKYDLLGKFAPRPKTATATATATAAAMNASNAPTTTEHPSSGDAGKVAERTDGQNVPESGRQGNLPAVTRPSPAKTPSHRGQALLQLRRDRHGKSSPGLALTNLGRSSSSRAAEGPATPRSSDDVILAGAMSASDGDTSDSADDDSDDALSDSEATALTLSPQDQATLKDVSLDVVASYLCGASHVFRTHWPAASSAAVDQTNENASTLGPLIMPPLPLSRAVATASIVGTAAASSSPPRPTLRRWMLSRTAAWLIQNPQFRCMYGMRGASSTPGSELAIGDKIDVLEAMASALSIAAAPAPTNEAAETRTAAANTEAEAAVPTLRDLVRPSKHVAGVAGVAADGVEVAEVLEPTRIAAGCQGSVVEALPSSLTLWDKSKLSAVSGQKHIVAKVLLTDASPAWHEEIVAWLERLRVAFETHGLGTHVGDAQSILAVADGSESLALSSCLDRLWQDGETWLDTLRSISSRVEVDLLQGKHVVVYTLQPPNSSACASTGFRGLLRLEADLRAMLSEQVGVLAEQLLVRAVSPSMMTESGSLGFGQQSQTLRRLAFSVYDQLPRLVRRQPAKVLHGREAGPISAVVQFPAFSLSTVSASGASKTGRTNLSLGWPQEPAAALDEHVLLHISYRVCQTGPREQAEQDSNASLVATRVFGLSGLADGGQVASTTTTPRERIVLVSAIDERGGSSTVEALAANDGDSSIEACVERVWRFALAEASRARVRWRLAVSSAEVMSQRELAAWQRMIGSYTATTEAEERVMGSVELLSVRPDEAGAVVAERGGRTKPSQPWAATADKSSLVLLDAADFSQMVRFAEPMPMGWTQAVAEEEEAADDDDEEDKEGDEKDALALPIASAMLVHRSRPDLLSSTANKMHRLDGGASASQVLAVDMLYRWTGSGTEQQQQQHEEAQDEAAQEEAMDAILRSLHRLRLLSEERHQLAWPYTAQPWSVASVNTLAACLEGIVLDD
Length2162
PositionKinase
OrganismSporisorium reilianum (strain SRZ2) (Maize head smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Sporisorium.
Aromaticity0.04
Grand average of hydropathy-0.298
Instability index52.26
Isoelectric point5.54
Molecular weight225874.11
Publications
PubMed=21148393

Function

Annotated function Component of the SRB8-11 complex. The SRB8-11 complex is a regulatory module of the Mediator complex which is itself involved in regulation of basal and activated RNA polymerase II-dependent transcription. The SRB8-11 complex may be involved in the transcriptional repression of a subset of genes regulated by Mediator. It may inhibit the association of the Mediator complex with RNA polymerase II to form the holoenzyme complex. 
ECO:0000256	RuleBase:RU364134
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP26729
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     509.30|      82|      82|     842|     923|       1
---------------------------------------------------------------------------
  519-  566 (54.31/17.42)	..........FPQS..PS.G.......................L.QSHQ..........DQPHLQDpQQ.LPE.....AS.LVPS.AQGEASDQ...........................D.......MPL......A................AP...SS.............................
  646-  676 (31.25/ 6.30)	......................................................................AQG........TAPY.TPGEPDD...................AS.................L......A................RH...RAS...TR............ADI.TP....A
  677-  776 (78.84/29.25)	SLSFADFDFaMPTA..GS.A.......................T.SSHA...........LP.AAG.QS.VPP.....GT.ASPL.KRESTSIE.PAQAAN...........STE......AfgqdlnwMQFlppqgsE................AP...ASS...SEPAfamqidatSAGSI.LNA..TA
  795-  837 (40.84/10.93)	LLSGNS.SS.VPES.......................................................gATA.....AA.HAPNtAASQSLLQ.PLPQMQS.........HEST......P.....................................................................
  870-  955 (108.06/43.34)	LLTEDDFSF.FDES..AF.G.......................L.DAEG..........DLAQHMD.QT.AEG.....VS.MGPS.QHHLTFDQ.PQAGANHatapnmsmaNE.........................A................QP...ASS...TAPA........VIDDVaMED..VG
  956- 1046 (62.89/21.56)	QSSLD..AL.F..S..AIpG.......................LqDAMAssesshpqsaPLQTSLS.TS.ATA.....VSqLAP...........PRLG..H.........SAAQ......D.......MTV......A........nagsthafHP...AMSsftPRDA........SGATP.FGD..PA
 1047- 1173 (56.50/18.48)	SLPGFTPSS.LTESspAF.GnphyktprtpyspaeefrdgatiV.DLHN............GHRMG.ES.AQGyrdrnAA.SAPD.L.HAS.DQhPLSG..H.........KADTllhddqQ.......LRL......AdastaaaaaanaametDA...SSR...KRTA............I.VPNafLP
 1247- 1314 (76.61/28.17)	.....DGQN.VPES.....G.......................R.Q..G..........NLPAV....T.RPS.....PA.KTPS.HRGQALLQ..LRRDRH.........GKSS......P........GL......A................LTnlgRSS...SSRA........AEGPA.TP.....
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     214.53|      45|      46|     104|     148|       2
---------------------------------------------------------------------------
   28-   65 (40.99/15.95)	TTAG..PfasharsTSIAN...GP.PT.........HRRTTGGVGP............aQHASSP
   66-  109 (52.26/22.81)	SSNPifP.......RPFPNAAFPG.TVSA..........PRSAAAPntALATPRSI...QHLSLL
  110-  154 (79.87/39.61)	TTET..P.......TSIARLAFPP.HTAIY.....WHRLQKNSDAP..ATTTGHDH...QRQDAA
  155-  203 (41.41/16.21)	TSST..A.......ASAS..SSPSwHTGVQrvlssANKSRSQPRAP..EEVHGQDHaalQRL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     727.80|     201|     209|    1604|    1811|       3
---------------------------------------------------------------------------
 1548- 1733 (239.57/146.37)	.........................EPTRIAAGcqgsvVEAL......P.SSLTLWDKSKLSAVSGQKhiVAKVLL..TDASPAW...........heeivawLER...LRVAFETHGL.....GTHVGDAQSILAVADGSESLALSSCLDRLWQDGETW..LDTLRSISSRV....EVDLL.....QGKHVV.VYTLQPPNSS..ACASTGFRGLLRLEADLRAMLSEQVGVLAEQLLVRAVSPSMMTESGS
 1736- 1943 (275.62/178.96)	FGQQSQTLRRLAFSVyDQLPrlVRRQPAKVLHG.....REAG......PISAVVQFPAFSLSTVSASG..ASKTGR..TNLSLGWPQ.....EPAA......aLDEhvlLHISYRVCQT.....GPREQAEQDSNASLVATRVFGLSG.....LADGGQV..ASTTTTPRERIvlvsAIDER.....GGSSTVeALAANDGDSSieACVERVWRFAL.AEAS.RARVRWRLAVSSAEVMSQRELAAWQRMIGS
 1944- 2135 (212.61/123.44)	YTATTEAEERVMGSV.ELLS..VRPDEAGAVVA.....ERGGrtkpsqPWAATAD..KSSLVLLDAAD..FSQMVRfaEPMPMGWTQavaeeEEAA.......................ddddeEDKEGDEKDALALPIASAMLVHRSRPDLLSSTANKMhrLDGGASASQVL....AVDMLyrwtgSGTEQQ.QQQHEEAQDE..AAQEEAMDAILRSLHRLR.LLSEERHQLA..................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     197.10|      40|     287|    1205|    1244|       4
---------------------------------------------------------------------------
 1205- 1244 (68.80/32.29)	APRP...KTATATATATAAAMNASNA..PTTTE..HPSSGDAG.........KVAE
 1381- 1406 (28.60/ 8.21)	VFR.......THWPAASSAAVDQTNE..NASTL..GP...................
 1410- 1452 (56.70/25.04)	PPLPlsrAVATASIVGTAAASSSPPR..PTLRR..WMLSRTAA.........WLIQ
 1494- 1545 (42.99/16.83)	APAP....TNEAAETRTAAANTEAEAavPTLRDlvRPSKHVAGvagvaadgvEVAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.75|      30|      94|     334|     364|       6
---------------------------------------------------------------------------
  334-  364 (49.26/30.75)	TSQQRKAHKRFMAS...IKARFIdSLASGQPTSP
  428-  460 (48.50/25.76)	TSLYVRATSRPLAAlplINTRFA.SISTPLPPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.68|      12|      68|     311|     322|       8
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  311-  322 (21.37/11.15)	SGSYRLSAAATN
  382-  393 (20.31/10.16)	SRSSGLSSTATN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.18|      27|     187|     283|     309|       9
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  283-  309 (48.60/24.52)	PL..DPTLARHLPADLV..KSLSRLSTSAHA
  469-  498 (35.75/16.01)	PLgcHVELAGMVPTTLVaqEHLSELG.SAFA
 1174- 1192 (29.84/12.10)	.L..RPPEAR.........KPLQRLPAGARA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26729 with Med13 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DAEGDLAQHMDQTAEGVSMGPSQHHLTFDQPQAGANHATAPNMSMANEAQPASSTAPAVIDDVAM
2) DNATSASIIEATDTGAAHASNRDADASQDAAAAARGDSTPLDPTLARH
3) GLQSHQDQPHLQDPQQLPEASLVPSAQGEASDQDMPLAAPSSAGIDRESA
4) GSATSSHALPAAGQSVPPGTASPLKRESTSIEPAQAANSTEAFGQDLNWMQFLPPQGSEAPASSSEPAFAMQIDAT
5) HRLQKNSDAPATTTGHDHQRQDAATSSTAASASSSPSWHTGVQRVLSSANKSRSQPRAPEEVHGQDHA
6) LGRKYDLLGKFAPRPKTATATATATAAAMNASNAPTTTEHPSSGDAGKVAERTDGQNVPESGRQGNLPAVTRPSPAKTPSHRGQALLQLRRDRHGKSSPGLALTNLGRSSSSRAAEGPATPRSSDDVILAGAMSASDGDTSDSADDDSDDALSDSEATALTLSPQD
7) PMGWTQAVAEEEEAADDDDEEDKEGDEKDALA
8) QASASIPAAAMGGGSGNPNSSMAHTTAGPFASHARSTSIANGPPTHRRTTGGVGPAQHASSPSSNPIFPRPFPNAAFPGTVSAPRSAAAPNTALATPRSIQHLSLLT
9) QDAMASSESSHPQSAPLQTSLSTSATAVSQLAPPRLGHSAAQDMTVANAGSTHAFHPAMSSFTPRDASGATPFGDPASLPGFTPSSLTESSPAFGNPHYKTPRTPYSPAEEFRDGATIVDLHNGHRMGESAQGYRDRNAASAPDLHASDQHPLSGHKADTLLHDDQQLRLADASTAAAAAANAAMETDASSRKRTAIVPNAFLPLRPPEARKPLQRLPAGARA
10) SILNATAKVTDEAKHSHIDPTSTNWLLSGNSSSVPESGATAAAHAPNTAASQSLLQPLPQMQSHESTPFQGQHATTPLGFAQPTSSKRKAGEGDIFG
887
244
525
691
131
1194
2013
4
970
770
951
291
574
766
198
1359
2044
110
1192
866










Molecular Recognition Features






MoRF SequenceStartStop




1) AIYWHRL
2) ARANLGRKYDLLGKFAPR
3) HKRFMASIKARFI
4) HRGQALLQLRR
127
1190
341
1274
133
1207
353
1284