Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MSRSTDAGPSTVPAAPPKEVQLSVEPVHIYTDPDPYPSNSTGAAHTILDAFERERKLQDITADGTNVFATRKPASVQLGEDVRRLWAERGDFSRFRTSQLMRGKREREQESVASSSDDDEEDGADMEGKGKGKGEEDADAAAGLLRRSGEKVGGTIAESEFVAMRNAVLANLDVAHFNSIHAHQLLGMLIKQHRSATSTSTTTAAAGRMGSPAPSVGGQSARSGSTTTAAAPKAPLGIFSHLATAREEEFVLDPLAIALSRTSLASTTTAVRRTLADANADADSDDEYAADPTSAAYGLKQAQREIEAAPGFAEAQLREFKVVLETKRKAIANAAELLSSAAGELRAGQGANRERWRALIGLHARGWRMTPGRPLLDVERFGVSTGEEEEVDVDEGDADKADPAAANGEEAGEAKTAKGGKKQGGEKKTTAAAGLQGFGTPIITSDGKVKEEGARDAWIGFGLPEAPIELRRRSLAYWADSASSSTNTTADEIKHKLVFPDRMHRRLRVRFVLWPPSSSGPEQQQKDEKRLEWCSDPTSSSGTTGKEDGPVVVGAVLDEELQDASREATDELVFGDVVAQARKLPPSFGVRLTATSVRIVLTKRLDLVVELVATSSSASETEAPRYAPHAALLLAFLRMGPLRKYQAFALAVDLARRSDAPARAAALKAAALGAPKKSTANASTGTSAKGGIAAGGTATSHALRRLDTLGPVLVGLHYCSFVHRLGSMLSHVQQRASHTDSRVTVHLVPLDTGASPAHLTHALSRIVDGVASASTQAPAADTLHGHARVYVQAGGQARRLLCTLTFAQPSVLSVQFAAGARGGSAQSRVRLTTKPLAVDVDTLRALLVQQLEL |
Length | 853 |
Position | Head |
Organism | Sporisorium reilianum (strain SRZ2) (Maize head smut fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Sporisorium. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.345 |
Instability index | 43.98 |
Isoelectric point | 6.63 |
Molecular weight | 90241.95 |
Publications | PubMed=21148393 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP26724 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 98.29| 21| 22| 194| 214| 1 --------------------------------------------------------------------------- 194- 214 (39.03/20.34) RSAT......STSTTTAAAGRMGSPAP 219- 235 (31.09/14.60) QSAR......SGSTTTAAAPK....AP 415- 441 (28.17/12.49) KTAKggkkqgGEKKTTAAAGLQGFGTP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 389.81| 119| 316| 240| 366| 2 --------------------------------------------------------------------------- 18- 149 (164.64/75.19) KEVQLSVEPVHIYTDPDPYPSNSTGAAHTILDAfererklqDITADGTNVFATrKPASVQLG..EDVRRLWAERGdfsrFRTSQLMRGK..REREQESVASSSDDDEEDGADMEGkGKGKGEEDAD.......AAAGLLRRsG 246- 366 (188.06/100.14) REEEFVLDPLAIALSRTSLASTTTAVRRTLADA........NADADSDDEYAA.DPTSAAYGlkQAQREIEAAPG....FAEAQLREFKVVLETKRKAIANAAELLSSAAGELRA.GQGANRERWR.......ALIGLHAR.G 660- 717 (37.11/10.64) ........................................................................APA....RA.AALK..AAALGAPKKSTANAS.TGTSAKGGIAA.GGTATSHALRrldtlgpVLVGLH.... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 52.87| 13| 20| 508| 520| 3 --------------------------------------------------------------------------- 508- 520 (26.22/18.66) RVRFVLWPPSSSG 530- 542 (26.66/19.12) RLEWCSDPTSSSG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 66.75| 20| 20| 738| 757| 4 --------------------------------------------------------------------------- 738- 757 (34.55/23.13) HTDSRVTVHLVPLDTGASPA 761- 780 (32.20/20.98) HALSRIVDGVASASTQAPAA --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) HKLVFPDRMHRRLRVRFVLW 2) HTILDAFER 3) KEVQLSVEPVHIYTD | 495 45 18 | 514 53 32 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab