<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26718

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMASAPIASASEQPSTSTNPQLGPEPYFAYPTPTPEQLEEELPPYFENENVPLGLVLDRFARKGNHDLRVLLGEVLPQLSIRERPKPIIEYAKTTRQALLKYLAVLRWKTSVDIASTSAGSSVTNTAGPASFPTPHSNNDPNDDSPDAFAGKGKGKTQVDELVIKGKVTDAKRIAHFMEHQNQQHEVAIEHVKHVTKLVEGLRERNPDLLTALSLLSTGTYNRLPTSLVDPYLPKPVLTNSAILKVLRRLNRQIRYRLRCLDYVPPELIVEDIKDGRMYARGDGWRAELTVVGFEDTSRWWLAGVEWGWKAKEKGVDDPGGRVIKKFTGEERQGILDIANGEVLPPRELPDEKSEMEVDTVVTEEPQVKKSELVEVVKKTVDAPLVRVYNFLQHLSLSYQLEVLFTQAIALSQSKWRGQLIPEMDRENKTLRLKYWLRERPVQVQRQDSTSNKRSQAPTTLATSRQLMVGGIIHIGLAETTTPRSELDNLLCDIACGGLAPSERVLKLELGVKWVVDEAGVGGGLKVDDVMDNSVLHLDPDALSAEDLLHICTRTHASHLTRSHGTSLLTSPRFLNASSVQPSLQESTDPSARPLTLRVPLPSRYAVSHLLIGVSPFSGLLEVEDEGAKGNDARAERAAMSMKSVNEGKTKLVDDITRLTTAIVVENIEAQMRQLGWKPTRQIALRLKDLIKADLHPITTVFIPLASSPNHYFVAKAVQNGIVFELLKVAKVPNENGLGMRYMVGDRTMMDLGKLRARRKGGDDKPQRFEVDNKDLKGLFILSNALVAQTIVEQQLKDRSILYTQQFPPTAGPASPKSTSPLAGMVPTICVDVRDLLRAGRGGRSAAMEVAMPKVWLQIEGWWEGGKCEVVTIVVLRHQPSTVAPQTASQEGKSKTDSAESVNAEGISFDPKSSVVRFRAKDISRCVPAFLEQWERLSKVIAVAGEVSLLNKMESFKDVKMLSFDLRTAVLQYAPGYNASVTYSPTDDSYRITFFLSSTSSDTDRNPHELLAPLLSAKLNELTSTDIAGKNKAKGQVGREFMGLLKNTLPVLKLGKTLDIEKGWSMVILGVAKYRLVKDHDGKRFAVDVTLLPDLEHYLIQDGATPRGPDHVVDVYTGPLTSLEMDKVVRAVFDSERIIPAETADDEKMQGKNRLEPPVMKLDQGKSLVCEVERSERMLRKVMEEASKVMGLGNNMEMDS
Length1199
PositionTail
OrganismCryptococcus gattii serotype B (strain WM276 / ATCC MYA-4071) (Filobasidiella gattii) (Cryptococcus bacillisporus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Tremellomycetes> Tremellales> Cryptococcaceae> Cryptococcus> Cryptococcus gattii species complex.
Aromaticity0.06
Grand average of hydropathy-0.332
Instability index38.56
Isoelectric point6.93
Molecular weight132875.72
Publications
PubMed=21304167

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26718
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     165.15|      68|     563|       5|     114|       1
---------------------------------------------------------------------------
   14-   54 (27.79/33.30)	.................................................................STSTNPQlGPEpyfAYPTP.TPEQLEEELPPYF................................enenvPLGL
   55-  148 (85.47/77.87)	VLDRFARKGNHDLRVLlgEVLPQLSIRERPKPIIEYAKttrqallkylavlrwktsvdiastsagSSVTNTA.GPA...SFPTPhSNNDPNDDSPDAF.........................................
  245-  321 (51.90/24.25)	VLRRLNRQIRYRLRCL..DYVPPELIVEDIKDGRMYAR............................................................gdgwraeltvvgfedtsrwwlagvewgwkakekgvddPGGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     226.34|      75|     105|     980|    1060|       3
---------------------------------------------------------------------------
  980- 1060 (118.56/92.50)	VTYSPTDDSYRItfflssTSSDTDRNPHELL....APLLSAKLNELTSTDIAGKNKAKGQVGREFMGLLKNTL..PVLKL..GKTL..DIE
 1088- 1172 (107.78/71.51)	VTLLPDLEHYLI......QDGATPRGPDHVVdvytGPLTSLEMDKVVRAVFDSERIIPAETADDEKMQGKNRLepPVMKLdqGKSLvcEVE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26718 with Med14 domain of Kingdom Fungi
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