<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26689

Description Predicted protein
SequenceMAQEQVSPPTLNERKSSADGGLMSKSKKLLGLGKKKQVGGGGGHGGDVDQQQQQQQQQQQQQQQQHQQQQQLSEQATATETTSDHSAAPLVPSSTPPVVPSSAPSLMPSPPLSASPTGRQASPRSSPRMRPVGGASPNRHRIGRSSSPGMHSPSSSLIFERNVQEPEPSADVPAHIKTEDHIPPALDASSLAITDDHLNPDEVEIVMHSAHQPASSAVAGGLSDSLYSPSLVPEESTAGSHADGSEAAAGYGSLDMTDPRRLSFISFADVVQAEQVEHDRQEMLGSGDGLPFRSLSSTAIRSPSPMASAVSSLGPSASPPTSGTASPKTGEMNRTKAPASPTFTAAHGTQSPPLVSGELPLQIETMRQALRKTHSGDLSGARSQPLSPVSLTHDESGQDRVAVQ
Length404
PositionTail
OrganismLeptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8) (Blackleg fungus) (Phoma lingam)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Leptosphaeriaceae> Leptosphaeria> Leptosphaeria maculans species complex.
Aromaticity0.02
Grand average of hydropathy-0.672
Instability index84.73
Isoelectric point5.82
Molecular weight42081.76
Publications
PubMed=21326234

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26689
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.19|      15|      15|      86|     100|       2
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   89-  104 (23.95/ 8.03)	PLVPSSTPPVVPsSAP
  312-  326 (26.24/ 9.48)	SLGPSASPPTSG.TAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.30|      17|      20|     114|     130|       3
---------------------------------------------------------------------------
  114-  130 (32.10/18.68)	ASPTGRQASPRSSPRMR
  135-  151 (33.21/19.62)	ASPNRHRIGRSSSPGMH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.19|      15|      15|     168|     182|       4
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  168-  182 (27.12/17.54)	PSADVPAHIKTEDHI
  184-  198 (25.07/15.65)	PALDASSLAITDDHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.98|      19|      30|     211|     232|       6
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  211-  229 (34.04/21.13)	HQPASSAVAGGLSDSLYSP
  241-  259 (34.94/14.61)	HADGSEAAAGYGSLDMTDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26689 with Med15 domain of Kingdom Fungi
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