<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26678

Description Uncharacterized protein
SequenceMPHKHRRIEDDKTQFNLPPTEQATSLPVGKARTFSTATKSKKRKAAHIDGYGADDTPKAFQRLMALTKGGIKKRSMLDDGLVKTKKQKKQQQQQQQQQQQQQQQQQQQQQQALEEDGRKASISGKTEEQQNPAATPALKIQPGESMAEFRARVDQALPLSGISKSGKKVAGVSDHRVTKHERHLKRLQKGWREEEARIRDKEMEAAELAEEEEEELAAMWEDKTEDLSTPFTATNKKKKKSNKTAKRKHFVGEVDNGSEDEWEALKRKRGQPKGLHDVVSAPPTFTKLPREIFKVRNGAGAKVGNVPNSAGSLRKREELGEERKTIIETYRELMAAKKERLGTAAAAAVAAEAK
Length354
PositionTail
OrganismLeptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8) (Blackleg fungus) (Phoma lingam)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Leptosphaeriaceae> Leptosphaeria> Leptosphaeria maculans species complex.
Aromaticity0.04
Grand average of hydropathy-1.164
Instability index55.41
Isoelectric point9.77
Molecular weight39724.40
Publications
PubMed=21326234

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26678
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.23|      14|      41|     110|     125|       1
---------------------------------------------------------------------------
  110-  125 (19.99/17.33)	QQALEEDGrkASISGK
  154-  167 (25.24/14.79)	DQALPLSG..ISKSGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.49|      15|     194|      30|      44|       5
---------------------------------------------------------------------------
   30-   44 (25.50/17.51)	KARTFS...TATKSKKRK
  223-  240 (19.99/12.09)	KTEDLStpfTATNKKKKK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26678 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MPHKHRRIEDDKTQFNLPPTEQATSLPVGKARTFSTATKSKKRKAAHIDGYGADDTPKAFQRLMALTKGGIKKRSMLDDGLVKTKKQKKQQQQQQQQQQQQQQQQQQQQQQALEEDGRKASISGKTEEQQNPAATPALKIQPGESMAEFRARVDQALPLSGISKSGKKVAGVSDHRVTKHERHLKRLQKGWREEEARIRDKEMEAAELAEEEEEELAAMWEDKTEDLSTPFTATNKKKKKSNKTAKRKHFVGEVDNGSEDEWEALKRKRGQPKGLHDVVSAPP
1
283










Molecular Recognition Features






MoRF SequenceStartStop




1) AKRKHFVG
2) DEWEALKRKR
3) FQRLMA
4) LHDVVSAPPTFTKLPREIFKVRN
5) LPVGKARTFSTATKSKKRKAAHIDGYGAD
6) MPHKHRRIEDDKTQFNL
245
260
60
275
26
1
252
269
65
297
54
17