<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26674

Description Predicted protein
SequenceMNQNFQGAPDRDDLRILDQLRRQLLPMIAVMTKLQHEMQFKMERGLAVDWPQIQHTTTIVSNYINSFNTMIHGGYQHTTEDIVTKVPKLDENGNIIKDDLGNPVDSGKEATKTIYRDIHNPGQGDRIKALHPFPIPPFPMHLPHAQGMANTLLRKRLEPMEEGWVGKRLQKAAEFAEVPEAWGIEPKKPEAKEEDDEKDGDDEDTREDANAMPLKRVKGALSEADIVEMWRMAHQEAFDQEYLKATYPNIYGDDAGAEDEEDEDEEDEDEDEGEFEDAMDTSGAPEVAVSAPSTVVTKGATQDVASVKPPVHQPVPGQPVLPLGFIHKFMVLGEAGGK
Length338
PositionHead
OrganismLeptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8) (Blackleg fungus) (Phoma lingam)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Leptosphaeriaceae> Leptosphaeria> Leptosphaeria maculans species complex.
Aromaticity0.06
Grand average of hydropathy-0.744
Instability index44.65
Isoelectric point4.61
Molecular weight37797.78
Publications
PubMed=21326234

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26674
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.35|      18|      62|     190|     208|       1
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  190-  208 (28.67/18.48)	EAKEEDDEkDGDDEDTRED
  254-  271 (32.68/17.04)	DAGAEDEE.DEDEEDEDED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.47|      13|      15|     153|     166|       2
---------------------------------------------------------------------------
  153-  166 (21.96/16.01)	LRKRLEPME..EGWvG
  169-  183 (19.50/ 9.35)	LQKAAEFAEvpEAW.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.44|      18|      19|      86|     103|       4
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   80-   97 (28.28/18.09)	EDIVTKVPKLDENGNIIK
   98-  115 (30.16/19.77)	DDLGNPVDSGKEATKTIY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26674 with Med8 domain of Kingdom Fungi
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