<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26671
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPNYEHPQLAFGPWDMASSYIWAFVPVSFKYLYSIHWTVFSTGNPPPFPVVAKTWRTTDPSSTSSSSTSSSSSSSSSSSSSSSSIIHSLPGWLAWHVVQQWMGVEEQSSSQVRARAFTDQHEALANWTRGAANDEGCTRKERSRLSRGGRQQAKRASSKLQGSFQLPTRPDQTRPDLARYSMDVDDLFGDSENVNLQTINVAPPVKGLARRIDDLRSSGCCQRIAWSKNGCVAYITPDGYSVKLKVFFRDPATAKWDLGKDVPLEFPQGHDVYPLVHVSWSNLGNDLAVVDEAGRAMVFSCAMALDRLQFVPVELAHPESEADAVVGMHWLAILPYEQKSHIAWSAVRDGAKWKWNIRSHKFHDAHHPIDSKASFIYLKRHGELRLRFQQNDSAWQESSAQLGPMVSTKEPFTHAAFASNNGKNQTKSLLLAAYDVNRRLHLYRIETTWNIPADKQPNRVTPFEKPTIQVVLIAMEDNTSPIDLTAADLSNGTEPQGTAAAQLTHLNFLPITPEHGDGSLPTIQAIFARPPNMIACDQMSPQETLHSVIVKWTVLQSQQNQVHPSLDQVTSKKKGVNSVSGRTIFLLQRQPDFTLHAVVLAFYPIWYNMLLAFCYSDGTLEFRKRSTMEIIMPDGNTNTVTSLLQAGYVFSHAEPSLHVAFSPNHCIAVCMQQEGGIKLRPMEYQNGTITDEEDPRHSAALAALVLQSSSAAHQYYSSDDIFAILGPLSEKRKQDFIALLFDGLDVNIDCGIDDMCNNHLILLGRAPFFVKTLSAMHILGLEGIVSRSLTSKIAWIVLNIKYVTQILTTIARIHNQKSPLESNSLRPDGVPQLIGVCRWMMHFMAYILDELFSLGREIEDIPPESLTREVLEQKIHELNKPAVLILLSAFPRFMMKSWAHPLAWVKRSADTLTHSSTPVPAPEIRRIYTPLHVALNELPFEWRWFEMLVVETHNLVRGTFKKAGLSDSQRNAVERDLLVGKIPDVLFPVAKRLVTDRLWNSAQPGGCLADKLDVGRLMFFDTTWLGFTESKRARLWHQSHVVDVCQKMVIRGRGKTVYPGIAGPLQGQGQGHSQGQGQSQNGDRNDGLRSVHGAGLGAVGGLEEPGKKARLRQCVRCGECMEDVVQGLPGYSLTHASWLMGVAKHCNCGNSWMLADDKKGAK |
Length | 1162 |
Position | Tail |
Organism | Leptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8) (Blackleg fungus) (Phoma lingam) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Pleosporineae> Leptosphaeriaceae>
Leptosphaeria> Leptosphaeria maculans species complex.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.271 |
Instability index | 50.44 |
Isoelectric point | 8.00 |
Molecular weight | 129442.95 |
Publications | PubMed=21326234
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP26671
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 90.65| 32| 123| 511| 550| 2
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511- 550 (45.46/49.29) ITPEHGD...GSLptIQA..IF..ARPPNMIAcdqMSPQetlHSVIV
631- 669 (45.19/25.88) IMPDGNTntvTSL..LQAgyVFshAEPSLHVA...FSPN...HCIAV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 81.27| 24| 123| 892| 925| 4
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89- 114 (41.73/15.52) LPGW...LAWhvVQQWMGVEEQSSSQVRA
895- 921 (39.55/27.46) MKSWahpLAW..VKRSADTLTHSSTPVPA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 66.32| 17| 120| 261| 284| 6
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268- 284 (35.36/36.73) QGHDVYPLVHVSW.......SNLG
1126- 1149 (30.95/13.37) QGLPGYSLTHASWlmgvakhCNCG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 126.39| 37| 691| 330| 411| 8
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330- 370 (62.96/87.11) WLAILPYEQKSHIAWSAVRDgakwKWNIRSHKFHDAHHPID
428- 464 (63.43/19.32) SLLLAAYDVNRRLHLYRIET....TWNIPADKQPNRVTPFE
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