<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26669

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSDSFSLPLRPVRKKTDEPDTLPIRIAQINAQRGSFKDVTEESLSQEIASLRESGKQEPDIQETEDSGNDAEDREQRLFTSRSEMLEFATQAQVEACYALDFVSLALSKYAPRQVEVSMTPYVKQKIPSGSLGIDLVKTPEKTEANKKDIEIVSKGWKLESFSSAANNLLEAATRLQKEVAAETKYWSEVLAIKEKGWKICRLPRERQSLGVQHGFLEAAPVFRDRGLSALRRAGDGSLYVDQGIHATPPKAVRIRIQDNENIVGVSQPACIKHDDNTSTEETFIHQARDSLFEEELFYELNREARSLLRHGVETRQNQILFHLSDNRRVLVDFVPVGEDATSDQDKAEGLPANDLAHAIACSIRLLLNHAHRKNHRHRTSIPTAISIKKRPTAEYPLLQPSIAYLQHGSHLQWLNSCLHNITATLFSAGLKYRYWKNKPLPRDTQETATNQGKAIPLVESLVDTFLSVQEARMTGYFYSQDNFYNIVVRTDLSPAALGTEFTVSTVHSSLPHGRITQRFGTREDLKEYFLYLFTLDIVQNIPFRGNTSSVSAVPNTSHGETGTNSLGADENNTKSAIWEPIFAENGELTSYIPGQSQNKKLKVTLNEESLELLCMSLSSTANTVEENKYLWSMDQTKDEPQITLQEALRRLEAKE
Length656
PositionHead
OrganismArthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) (Microsporum gypseum)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Onygenales> Arthrodermataceae> Nannizzia.
Aromaticity0.07
Grand average of hydropathy-0.540
Instability index47.50
Isoelectric point5.82
Molecular weight73849.02
Publications
PubMed=22951933

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26669
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.14|      25|      37|     584|     608|       1
---------------------------------------------------------------------------
  584-  608 (41.59/31.03)	AENGELTSYIPGQSQNK.KLKVTLNE
  622-  647 (39.56/29.13)	ANTVEENKYLWSMDQTKdEPQITLQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.54|      35|      42|     363|     398|       5
---------------------------------------------------------------------------
  363-  398 (57.14/44.57)	SIRLLLNHAHRK..N...HRHRTSIPTAiSIKKRPTAEYPL
  402-  441 (53.40/36.52)	SIAYLQHGSHLQwlNsclHNITATLFSA.GLKYRYWKNKPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26669 with Med17 domain of Kingdom Fungi
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