<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26636
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MESMVDEWKVFLSRCIASRIPPDVFAAAVAQLHAKSPLPGRKLAALVLLPRAAGIDPRSIAILEQLLALKKVDASDVLTVTFLHSKDRRPINTGDEKTPKDAQWSNPPELEEIIFHRLHKAFASEERPVNNTEGLRTLIVVTRWMQVMVTSHTSDSMIQAMAGIQQPHQQSINAREGLAMLVIGVIENPRILAILSNPKGKDIRKNFVQSLSSFIPFLHNNSAGSQTSLSLASRLEMSQKQHDFFEKLPNVNGERNDGTGLEVAALQLDAVMELPQVNTRPGLYVFLNALLVARPLTDDFTIISHLHSRYKLEAQNMATDLITAAFDILANAMYRNEQSETLFYLKSFLINKVPILLTKLSGSIFPMTVEMCITQALSHVDPHAFPSFSQGFDDIMGSNNSLSDVRQDFLNACALHGLIAAGTVERLLGEAPMQGPPAKRYERKELLNQCKTNFDKISLYIDELENVDGNAGAIVAAVTDFISHLCETQTTMYLKQLSCLIFRKPQAMDVMLQFTSPPSILRPLCQFLDDWHYDSDQGEHQPVYDEFGAILVCIMTFMYRYDLTYHDIGIGHDSFVAKLMQRGHHGMLPDELTEEQGKHLGNWLKGLYDSDKEGLSNEVFASCRPQEFYLIVPTLFRQTVVACSTGVLSFETVKGGLEYLGETFLLPSLIGGLTWMASYALLQTHNDLDAMIRIFNEVILSTPTSGDAQAMHSTIIAIVSSRLEKCFRTLQRREPNRTTLEPFIQAIKAHSHYERTAYATLKELDQWTNVPHSTLNTSLRHTVQQLSQWASTASLQPNPPSYTHRQIYASLKMLGATRTLRAIVEEVRNQTDAGNGAAALDIGISIICAPMVEDSPVSVDWVASPIAAPAPQRTRMNLREILKQEFDCAANLVATDPLTAETIVRLHRRVEAHFASLNETGLQAPPINIPSVHIADMQSQTISDDLNRAIDDAAAASIVDDISNMDNKALQRSMDELTASEGLDLSSIGMGNGDSGTGDMGTDLGNLPDLDLGDMGSMGMDMDMDMGMGGGGGDDDWGLDFDNM |
Length | 1044 |
Position | Tail |
Organism | Pyrenophora teres f. teres (strain 0-1) (Barley net blotch fungus) (Drechslera teres f. teres) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Pleosporineae> Pleosporaceae>
Pyrenophora.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.135 |
Instability index | 40.60 |
Isoelectric point | 5.14 |
Molecular weight | 115385.27 |
Publications | PubMed=21067574
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP26636
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 56.14| 17| 17| 978| 994| 1
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978- 994 (29.83/18.19) TASEGLDLSSI.GMGNGD
997- 1014 (26.31/15.13) TGDMGTDLGNLpDLDLGD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.61| 12| 17| 655| 666| 2
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655- 666 (21.63/12.86) GGLEYLGETFLL
671- 682 (22.98/14.12) GGLTWMASYALL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.19| 13| 17| 934| 946| 3
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934- 946 (22.37/13.95) IADMQSQTISDDL
950- 962 (20.82/12.48) IDDAAAASIVDDI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 39.47| 10| 17| 841| 850| 5
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841- 850 (19.43/11.65) DIGISIICAP
860- 869 (20.04/12.23) DWVASPIAAP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.43| 15| 17| 793| 807| 6
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793- 807 (28.95/18.85) ASLQPNPPSYTHRQI
809- 823 (24.47/14.77) ASLKMLGATRTLRAI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 66.01| 18| 19| 750| 767| 7
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750- 767 (33.46/24.35) HSHYERTAYATLKELDQW
772- 789 (32.56/23.50) HSTLNTSLRHTVQQLSQW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 36.56| 10| 17| 357| 366| 8
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357- 366 (17.08/10.85) LTKLSGSIFP
377- 386 (19.48/13.55) LSHVDPHAFP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 81.70| 30| 133| 27| 63| 9
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27- 63 (40.95/38.05) AAVAQLHAKSpLPGRK.LAALVllpraaGI..DPRSIAIL
162- 195 (40.74/21.43) AGIQQPHQQS.INAREgLAMLV.....iGVieNPRILAIL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 63.35| 18| 27| 235| 252| 13
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235- 252 (33.38/24.44) LEMSQKQHDFFEKLPNVN
261- 278 (29.97/21.15) LEVAALQLDAVMELPQVN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 94.07| 25| 27| 527| 551| 14
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521- 550 (43.66/27.46) L..............rplcqFLDDW...HYDSD.QGEHQPVY.....DEFGAI
551- 578 (32.82/18.81) L..............vcimtFM..Y...RYDLT.YHDIGIGH.....DSFVAK
579- 631 (17.59/ 6.67) LmqrghhgmlpdelteeqgkHLGNWlkgLYDSDkEGLSNEVFascrpQEFYLI
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